WormBase Tree Display for Variation: WBVar00216534
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| WBVar00216534 | Name | Public_name | WBVar00216534 | ||
|---|---|---|---|---|---|
| Other_name | pas28310 | ||||
| cewivar00110107 | |||||
| T21C12.1c.1:c.237+32A>T | |||||
| T21C12.1b.1:c.237+32A>T | |||||
| T21C12.1f.1:c.237+32A>T | |||||
| T21C12.1k.1:c.237+32A>T | |||||
| T21C12.1j.1:c.237+32A>T | |||||
| T21C12.1e.1:c.237+32A>T | |||||
| T21C12.1c.2:c.237+32A>T | |||||
| T21C12.1d.1:c.237+32A>T | |||||
| HGVSg | CHROMOSOME_III:g.10522829A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T21C12 | |
| Flanking_sequences | ggcgacaaaaacaggcaaaaacagacaaaaacaggcaaaacaggcaaaaaacaggcaaaaacttatgtcaaaatttatcatttattatgaaagagcacctgaatttgtcttagatagtacaaatagtacatatctagttcaaaagtagatagtacaaaaacacggacaaaaatacttataacaaacattgcaggtatggtgaaaagccagtcgacgttggaattacgatacacgtttcttcaatctctgcagtttcagaagttgatatggtaaatgagttttatgaataccgtaaaaata | tacgaaaaattagcgttgccccaatttgttgaatagatagtgggaggactgcaccatctaatttaactctttttttttcattccaggacttcacattagacttctacatgcgtcaaacgtggcaagaccctcgactagccttcggaagtcttgatttgggactttccaaagaaatcgactcacttaccgtcggagtagactacctggatagactgtggaaacccgacacgttcttcccaaatgaaaagaaatcattcttccacttggcaaccacacataactcgttccttcgtatcgagg | |||
| Mapping_target | T21C12 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006784 | |||
| Transcript | T21C12.1k.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1k.1:c.237+32A>T | ||||
| Intron_number | 3/11 | ||||
| T21C12.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1c.1:c.237+32A>T | ||||
| Intron_number | 4/18 | ||||
| T21C12.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1e.1:c.237+32A>T | ||||
| Intron_number | 4/19 | ||||
| T21C12.1c.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1c.2:c.237+32A>T | ||||
| Intron_number | 4/14 | ||||
| T21C12.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1b.1:c.237+32A>T | ||||
| Intron_number | 4/14 | ||||
| T21C12.1j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1j.1:c.237+32A>T | ||||
| Intron_number | 3/5 | ||||
| T21C12.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1d.1:c.237+32A>T | ||||
| Intron_number | 4/17 | ||||
| T21C12.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1f.1:c.237+32A>T | ||||
| Intron_number | 4/11 | ||||
| Method | WGS_Pasadena_Quinlan |
