WormBase Tree Display for Variation: WBVar00239267
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WBVar00239267 | Evidence | Paper_evidence | WBPaper00005150 | ||
---|---|---|---|---|---|
Name | Public_name | pk298 | |||
Other_name | pk298te | ||||
K02A4.2.2:c.-18-582_83+37del | |||||
K02A4.2.3:c.-18-582_83+37del | |||||
HGVSg | CHROMOSOME_X:g.12882292_12883011del | ||||
Sequence_details | SMap | S_parent | Sequence | K02A4 | |
Flanking_sequences | aattattaaaaattaacatttttctggcca | gagaataggtatctatttttagtattgcta | |||
Mapping_target | K02A4 | ||||
Type_of_mutation | Deletion | ||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00028937 | ||||
Laboratory | NL | ||||
Status | Live | ||||
Affects | Gene | WBGene00001681 | |||
Transcript | K02A4.2.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
VEP_impact | HIGH | ||||
Intron_number | 2/3 | ||||
Exon_number | 1-2/4 | ||||
K02A4.2.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | K02A4.2.2:c.-18-582_83+37del | ||||
Intron_number | 2-4/5 | ||||
Exon_number | 3-4/6 | ||||
K02A4.2.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | K02A4.2.3:c.-18-582_83+37del | ||||
Intron_number | 1-3/4 | ||||
Exon_number | 2-3/5 | ||||
Interactor | WBInteraction000502742 | ||||
Genetics | Interpolated_map_position | X | 8.81488 | ||
Mapping_data | In_multi_point | 5508 | |||
Description (2) | |||||
Reference | WBPaper00043908 | ||||
WBPaper00031936 | |||||
WBPaper00032335 | |||||
WBPaper00005150 | |||||
Method | Deletion_allele |