WormBase Tree Display for Variation: WBVar00240576
expand all nodes | collapse all nodes | view schema
WBVar00240576 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00240576 | |||
Other_name | pkP3109 | ||||
T21C12.1k.1:c.1287+51C>T | |||||
T21C12.1f.1:c.563-981C>T | |||||
T21C12.1d.1:c.1251+51C>T | |||||
T21C12.1m.1:c.783+51C>T | |||||
T21C12.1c.1:c.1287+51C>T | |||||
T21C12.1e.1:c.1344+51C>T | |||||
T21C12.1c.2:c.1287+51C>T | |||||
T21C12.1o.1:c.59-981C>T | |||||
HGVSg | CHROMOSOME_III:g.10529605C>T | ||||
Sequence_details | SMap | S_parent | Sequence | T21C12 | |
Flanking_sequences | aatttgaatctcctgtcagaattttttcgc | ggaaaattttgctttcccgccaaaagtttt | |||
Mapping_target | T21C12 | ||||
Type_of_mutation | Substitution | C | T | ||
PCR_product | snp_pkP3109.amp | ||||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Confirmed_SNP | |||||
RFLP | Reference_strain_digest | HpaII | [200, 76, 41] | ||
Polymorphic_strain_digest | HpaII | [276, 41] | |||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00006784 | |||
Transcript | T21C12.1k.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T21C12.1k.1:c.1287+51C>T | ||||
Intron_number | 10/11 | ||||
T21C12.1m.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T21C12.1m.1:c.783+51C>T | ||||
Intron_number | 6/8 | ||||
T21C12.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T21C12.1c.1:c.1287+51C>T | ||||
Intron_number | 11/18 | ||||
T21C12.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T21C12.1e.1:c.1344+51C>T | ||||
Intron_number | 12/19 | ||||
T21C12.1c.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T21C12.1c.2:c.1287+51C>T | ||||
Intron_number | 11/14 | ||||
T21C12.1o.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T21C12.1o.1:c.59-981C>T | ||||
Intron_number | 1/5 | ||||
T21C12.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T21C12.1d.1:c.1251+51C>T | ||||
Intron_number | 10/17 | ||||
T21C12.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T21C12.1f.1:c.563-981C>T | ||||
Intron_number | 6/11 | ||||
Reference | WBPaper00004703 | ||||
Method | SNP_Wicks |