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WormBase Tree Display for Variation: WBVar00240576

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Name Class

WBVar00240576EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00240576
Other_namepkP3109
T21C12.1k.1:c.1287+51C>T
T21C12.1f.1:c.563-981C>T
T21C12.1d.1:c.1251+51C>T
T21C12.1m.1:c.783+51C>T
T21C12.1c.1:c.1287+51C>T
T21C12.1e.1:c.1344+51C>T
T21C12.1c.2:c.1287+51C>T
T21C12.1o.1:c.59-981C>T
HGVSgCHROMOSOME_III:g.10529605C>T
Sequence_detailsSMapS_parentSequenceT21C12
Flanking_sequencesaatttgaatctcctgtcagaattttttcgcggaaaattttgctttcccgccaaaagtttt
Mapping_targetT21C12
Type_of_mutationSubstitutionCT
PCR_productsnp_pkP3109.amp
SeqStatusSequenced
Variation_typeSNP
Confirmed_SNP
RFLPReference_strain_digestHpaII[200, 76, 41]
Polymorphic_strain_digestHpaII[276, 41]
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00006784
TranscriptT21C12.1k.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT21C12.1k.1:c.1287+51C>T
Intron_number10/11
T21C12.1m.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT21C12.1m.1:c.783+51C>T
Intron_number6/8
T21C12.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT21C12.1c.1:c.1287+51C>T
Intron_number11/18
T21C12.1e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT21C12.1e.1:c.1344+51C>T
Intron_number12/19
T21C12.1c.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT21C12.1c.2:c.1287+51C>T
Intron_number11/14
T21C12.1o.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT21C12.1o.1:c.59-981C>T
Intron_number1/5
T21C12.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT21C12.1d.1:c.1251+51C>T
Intron_number10/17
T21C12.1f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT21C12.1f.1:c.563-981C>T
Intron_number6/11
ReferenceWBPaper00004703
MethodSNP_Wicks