WormBase Tree Display for Variation: WBVar00243630
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| WBVar00243630 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00243630 | |||
| Other_name (15) | |||||
| HGVSg | CHROMOSOME_I:g.7430979del | ||||
| Sequence_details | SMap | S_parent | Sequence | C44E1 | |
| Flanking_sequences | agcgggtttgagtgaagacagtgat | atacatccgacgtgtccgttccagt | |||
| Mapping_target | C44E1 | ||||
| Type_of_mutation | Deletion | T | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00006752 | |||
| Transcript | ZK524.2f.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | ZK524.2f.1:c.580del | ||||
| HGVSp | CE43866:p.Tyr194IlefsTer112 | ||||
| cDNA_position | 580 | ||||
| CDS_position | 580 | ||||
| Protein_position | 194 | ||||
| Exon_number | 8/30 | ||||
| Codon_change | Tat/at | ||||
| Amino_acid_change | Y/X | ||||
| ZK524.2j.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK524.2j.1:c.535del | ||||
| HGVSp | CE51718:p.Tyr179IlefsTer112 | ||||
| cDNA_position | 535 | ||||
| CDS_position | 535 | ||||
| Protein_position | 179 | ||||
| Exon_number | 8/29 | ||||
| Codon_change | Tat/at | ||||
| Amino_acid_change | Y/X | ||||
| ZK524.2k.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK524.2k.1:c.535del | ||||
| HGVSp | CE51726:p.Tyr179IlefsTer109 | ||||
| cDNA_position | 535 | ||||
| CDS_position | 535 | ||||
| Protein_position | 179 | ||||
| Exon_number | 8/29 | ||||
| Codon_change | Tat/at | ||||
| Amino_acid_change | Y/X | ||||
| ZK524.2i.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK524.2i.1:c.580del | ||||
| HGVSp | CE32552:p.Tyr194IlefsTer112 | ||||
| cDNA_position | 580 | ||||
| CDS_position | 580 | ||||
| Protein_position | 194 | ||||
| Exon_number | 8/29 | ||||
| Codon_change | Tat/at | ||||
| Amino_acid_change | Y/X | ||||
| ZK524.2a.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK524.2a.1:c.580del | ||||
| HGVSp | CE15371:p.Tyr194IlefsTer109 | ||||
| cDNA_position | 580 | ||||
| CDS_position | 580 | ||||
| Protein_position | 194 | ||||
| Exon_number | 8/30 | ||||
| Codon_change | Tat/at | ||||
| Amino_acid_change | Y/X | ||||
| ZK524.2e.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK524.2e.1:c.580del | ||||
| HGVSp | CE34626:p.Tyr194IlefsTer109 | ||||
| cDNA_position | 580 | ||||
| CDS_position | 580 | ||||
| Protein_position | 194 | ||||
| Exon_number | 8/30 | ||||
| Codon_change | Tat/at | ||||
| Amino_acid_change | Y/X | ||||
| ZK524.2d.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK524.2d.1:c.580del | ||||
| HGVSp | CE34625:p.Tyr194IlefsTer109 | ||||
| cDNA_position | 580 | ||||
| CDS_position | 580 | ||||
| Protein_position | 194 | ||||
| Exon_number | 8/31 | ||||
| Codon_change | Tat/at | ||||
| Amino_acid_change | Y/X | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9756 VarD1=T | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_C44E1.1 | |||||
| [20040130 db] this Allele was previously named snp_C44E1.1 | |||||
| [20090224 db] original Wicks name : C44E1:7134..8091@612 Psnp=0.9756 VarD1=T | |||||
| [20090224 db] original Wicks id : vc86h12.s1@192,-,47 eam62d06.s1@271,t,62 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
