WormBase Tree Display for Variation: WBVar00244279
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| WBVar00244279 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00244279 | |||
| Other_name | snp_F17E5[1] | ||||
| cewivar00707519 | |||||
| F17E5.1b.1:c.1060+20_1060+24del | |||||
| F17E5.1a.1:c.2083+20_2083+24del | |||||
| HGVSg | CHROMOSOME_X:g.12401792_12401796del | ||||
| Sequence_details | SMap | S_parent | Sequence | F17E5 | |
| Flanking_sequences | gttaaaataaatattttttgatatt | ctttaaaaatattatttaccatttg | |||
| Mapping_target | F17E5 | ||||
| Type_of_mutation | Deletion | GATAA | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002991 | |||
| Transcript | F17E5.1a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F17E5.1a.1:c.2083+20_2083+24del | ||||
| Intron_number | 19/25 | ||||
| F17E5.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F17E5.1b.1:c.1060+20_1060+24del | ||||
| Intron_number | 8/14 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9221 VarD5=GATAA | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_F17E5.1 | |||||
| [20040130 db] this Allele was previously named snp_F17E5.1 | |||||
| [20090224 db] original Wicks name : F17E5:10203..11000@387 Psnp=0.9221 VarD5=GATAA | |||||
| [20090224 db] original Wicks id : yy62a09.s1@331,-,59 | |||||
| Method | SNP_Wicks |
