WormBase Tree Display for Variation: WBVar00244282

WBVar00244282 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00244282
    Other_name: snp_F17E5[4]
      F17E5.4:n.12_13del
      F17E5.1a.1:c.1227+449_1227+450del
    HGVSg: CHROMOSOME_X:g.12407394_12407395del
  Sequence_details: SMap: S_parent: Sequence: F17E5
    Flanking_sequences: gtgtgcgtgtgtgtgtgtgtgtgtg ctgaagtgaagggtccggttggctc
    Mapping_target: F17E5
    Type_of_mutation: Deletion: TG
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00198419
      WBGene00002991
    Transcript: F17E5.1a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F17E5.1a.1:c.1227+449_1227+450del
        Intron_number: 12/25
      F17E5.4 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: F17E5.4:n.12_13del
        cDNA_position: 12-13
        Exon_number: 1/1
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.7066 VarD2=TG
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_F17E5.4
    [20040130 db] this Allele was previously named snp_F17E5.4
    [20090224 db] original Wicks name : F17E5:15623..16561@566 Psnp=0.7066 VarD2=TG
    [20090224 db] original Wicks id : eam37f10.s1@490,-,34
  Method: SNP_Wicks