WormBase Tree Display for Variation: WBVar00249531

WBVar00249531 Name: Public_name: tm488
    Other_name: C33B4.3a.1:c.331-86_1608del
      C33B4.3c.1:c.331-86_1608del
      C33B4.3b.1:c.331-86_1608del
    HGVSg: CHROMOSOME_II:g.11388638_11390174del
  Sequence_details: SMap: S_parent: Sequence: C33B4
    Flanking_sequences: acctgttggcggtcgatgcacaatagttcc tgcatctgatggaatatgacgcataaaaca
    Mapping_target: C33B4
    Source_location: 7 CHROMOSOME_II 11388637 11390175 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm488_external
      tm488_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 488
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006444
    Transcript: C33B4.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C33B4.3b.1:c.331-86_1608del
        cDNA_position: ?-1789
        CDS_position: ?-1608
        Protein_position: ?-536
        Intron_number: 3-6/11
        Exon_number: 4-7/12
      C33B4.3c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C33B4.3c.1:c.331-86_1608del
        cDNA_position: ?-1688
        CDS_position: ?-1608
        Protein_position: ?-536
        Intron_number: 3-6/13
        Exon_number: 4-7/14
      C33B4.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C33B4.3a.1:c.331-86_1608del
        cDNA_position: ?-1686
        CDS_position: ?-1608
        Protein_position: ?-536
        Intron_number: 3-6/12
        Exon_number: 4-7/13
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000306 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. C. Rongo to the National Bioresource Project of Japan: normal GLR-1::GFP expression. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: OR
  Remark: 23167/23168-24704/24705 (1537 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele