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WormBase Tree Display for Variation: WBVar00249587

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Name Class

WBVar00249587NamePublic_nametm548
Other_nameF25D7.3a.1:c.713_1142-130del
F25D7.3b.1:c.713_1142-130del
HGVSgCHROMOSOME_I:g.10410665_10411474del
Sequence_detailsSMapS_parentSequenceF25D7
Flanking_sequencesaaaagattgaagcaaatactgaattatcattcaacggaaaagttttcaaaatacatgttg
Mapping_targetF25D7
Source_location7CHROMOSOME_I1041066410411475Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm548_external
tm548_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00047070
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq548
NBP_allele
StatusLive
AffectsGeneWBGene00003847
TranscriptF25D7.3b.1VEP_consequencesplice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF25D7.3b.1:c.713_1142-130del
cDNA_position770-?
CDS_position713-?
Protein_position238-?
Intron_number4/8
Exon_number4/9
F25D7.3a.1VEP_consequencesplice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF25D7.3a.1:c.713_1142-130del
cDNA_position770-?
CDS_position713-?
Protein_position238-?
Intron_number4/9
Exon_number4/10
InteractorWBInteraction000521439
WBInteraction000532923
WBInteraction000541114
WBInteraction000541115
WBInteraction000541120
IsolationMutagenTMP/UV
GeneticsMapI
DescriptionPhenotypeWBPhenotype:0000031Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. W. Vermeulen: GroPerson_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000050Paper_evidenceWBPaper00045431
Curator_confirmedWBPerson703
RemarkPartial penetrancePaper_evidenceWBPaper00045431
Curator_confirmedWBPerson703
WBPhenotype:0000183Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. M. Hengartner: very slight increase in germ cell apoptosis.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceWS
EQ_annotationsAnatomy_termWBbt:0006796PATO:0000460Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000229Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComments to the NBP from Dr. K. Ashrafi: has a small body size; Dr. J. Kaplan: Sma.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceKQ
KP
WBPhenotype:0000583Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComments to the NBP from Dr. R. Plasterk: Dpy appearance; Dr. W. Vermeulen: Dpy; Dr. Y-C. Wu: mild DpyPerson_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceNL
YW
WBPhenotype:0000643Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. Y-C. Wu: slightly UncPerson_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceYW
WBPhenotype:0000697Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. W. Vermeulen: Pvl.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0001182Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. K. Ashrafi to the National Bioresource Project of Japan: has altered fat content at adult stage.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceKQ
WBPhenotype:0001355Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComments to the NBP from Dr. Y-C. Wu: abnormal gonad morphology; Dr. J. Kaplan: abnormal gonad.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceYW
KP
WBPhenotype:0001494Paper_evidenceWBPaper00045431
Curator_confirmedWBPerson703
Phenotype_not_observedWBPhenotype:0000032Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. K. Ashrafi to the National Bioresource Project of Japan: healthy.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceKQ
WBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National Bioresource Project of Japan. Comment to the NBP from Dr. R.H. Horvitz: not synMuv with class A or B mutations and not a synMuv suppressor.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
MT
WBPhenotype:0000679Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. O. Blacque: wild-type localization of ODR-10 to AWB cilium.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceOEB
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. K. Ashrafi to the National Bioresource Project of Japan: fertile.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceKQ
WBPhenotype:0000729Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. C. Yang: no obvious cell death defectsPerson_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFU
WBPhenotype:0002535Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the NBP from Dr. O. Blacque: Dyf (+)Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceOEB
ReferenceWBPaper00045431
Remark19893/19894-20703/20704 (810 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele