WormBase Tree Display for Variation: WBVar00249714

WBVar00249714 Name: Public_name: tm684
    HGVSg: CHROMOSOME_X:g.1105589_1106379del
  Sequence_details: SMap: S_parent: Sequence: C05D9
    Flanking_sequences: aaaaaacaactgaaaacatttcacaccata cagtcgtttggtaatcatcatgaaaaatgg
    Mapping_target: C05D9
    Source_location: 7 CHROMOSOME_X 1105588 1106380 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm684_external
      tm684_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 684
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002062
    Transcript: C05D9.5.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 4/5
        Exon_number: 5-6/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000007 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: Egl at 25C, frequent bagging. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
        Phenotype_assay: Temperature: 25 Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
      WBPhenotype:0000640 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: Egl at 25C Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
        Phenotype_assay: Temperature: 25 Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
      WBPhenotype:0000673 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: less progeny at 25C. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
        Phenotype_assay: Temperature: 25 Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000531 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: normal development. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000535 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: normal body size/shape. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark (2)
  Method: NBP_knockout_allele