WormBase Tree Display for Variation: WBVar00250794

WBVar00250794 Name: Public_name: tm1830
    Other_name: K04F10.2.1:c.627_779-155del
    HGVSg: CHROMOSOME_I:g.6362101_6362447del
  Sequence_details: SMap: S_parent: Sequence: K04F10
    Flanking_sequences: cttgataagtttacctgaagaaccaatttc gaaaatgaatttataattcattgtctatat
    Mapping_target: K04F10
    Source_location: 7 CHROMOSOME_I 6362100 6362448 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1830_external
      tm1830_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1830
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00019395
    Transcript: K04F10.2.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K04F10.2.1:c.627_779-155del
        cDNA_position: 633-?
        CDS_position: 627-?
        Protein_position: 209-?
        Intron_number: 5/11
        Exon_number: 5/12
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000262 Paper_evidence: WBPaper00049039
        Curator_confirmed: WBPerson2216
        Remark: Animals exhibit defects in the A-tubule of a ciliary axoneme Paper_evidence: WBPaper00049039
            Curator_confirmed: WBPerson2216
        EQ_annotations: GO_term: GO:0097649 PATO:0000460 Paper_evidence: WBPaper00049039
                Curator_confirmed: WBPerson2216
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000249 Paper_evidence: WBPaper00049039
        Curator_confirmed: WBPerson2216
      WBPhenotype:0000662 Paper_evidence: WBPaper00049039
        Curator_confirmed: WBPerson2216
      WBPhenotype:0000663 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. O. Blacque: normal osmolarity sensing. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0001468 Paper_evidence: WBPaper00049039
        Curator_confirmed: WBPerson2216
      WBPhenotype:0002211 Paper_evidence: WBPaper00049039
        Curator_confirmed: WBPerson2216
      WBPhenotype:0002212 Paper_evidence: WBPaper00049039
        Curator_confirmed: WBPerson2216
      WBPhenotype:0002535 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. O. Blacque: normal dye filling Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Reference: WBPaper00049039
  Remark: 29915/29916-30262/30263 (347 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele