WormBase Tree Display for Variation: WBVar00250832

WBVar00250832 Name: Public_name: tm1869
    Other_name: F27D9.8.1:c.374-45_656del
    HGVSg: CHROMOSOME_X:g.7678188_7678998del
  Sequence_details: SMap: S_parent: Sequence: F27D9
    Flanking_sequences: aacctgatattgtcggttccccagaggtat tagacttgtaccatcatgcccttgcttgat
    Mapping_target: F27D9
    Source_location: 7 CHROMOSOME_X 7678187 7678999 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1869_external
      tm1869_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1869
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00017866
    Transcript: F27D9.8.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F27D9.8.1:c.374-45_656del
        cDNA_position: ?-751
        CDS_position: ?-656
        Protein_position: ?-219
        Intron_number: 6-8/16
        Exon_number: 7-9/17
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
    Mapping_data: In_multi_point: 5316
  Description: Phenotype: WBPhenotype:0000324 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. Lihsia Chen: short. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0001265 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. Lihsia Chen: hyperactive head bending. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as 'homozygous viable' by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Disease_info: Models_disease: DOID:11723
    Models_disease_in_annotation: WBDOannot00000295
  Remark: 28260/28261-29071/29072 (811 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele