WormBase Tree Display for Variation: WBVar00250969

WBVar00250969 Name: Public_name: tm2021
    Other_name: F54E7.7.1:c.120+6_446del
    HGVSg: CHROMOSOME_III:g.5683486_5683904del
  Sequence_details: SMap: S_parent: Sequence: F54E7
    Flanking_sequences: gacgcaagtctggccattaaatcaaaattg cttacatcttctggtacttgagtcacaata
    Mapping_target: F54E7
    Source_location: 7 CHROMOSOME_III 5683485 5683905 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2021_external
      tm2021_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2021
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004321
    Transcript: F54E7.7.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F54E7.7.1:c.120+6_446del
        cDNA_position: ?-515
        CDS_position: ?-446
        Protein_position: ?-149
        Intron_number: 2-3/5
        Exon_number: 3-4/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Characterized as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. J. Ahnn: normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KJ
  Remark: 29802/29803-30221/30222 (419 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele