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WormBase Tree Display for Variation: WBVar00251176

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Name Class

WBVar00251176NamePublic_nametm2262
Other_nameK04D7.1.2:c.121_408del
K04D7.1.1:c.121_408del
K04D7.1.3:c.121_408del
CE06090:p.Thr41_Ter136delextTer?
HGVSgCHROMOSOME_IV:g.10176878_10177208del
Sequence_detailsSMapS_parentSequenceK04D7
Flanking_sequencestcaaatttatactcacatttttcagacaagctgtggaacactcttgcccagtgcaagtac
Mapping_targetK04D7
Source_location7CHROMOSOME_IV1017687710177209Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm2262_external
tm2262_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00024150
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq2262
NBP_allele
StatusLive
AffectsGeneWBGene00010556
TranscriptK04D7.1.1 (11)
K04D7.1.3 (11)
K04D7.1.2 (11)
IsolationMutagenTMP/UV
GeneticsMapIV
DescriptionPhenotypeWBPhenotype:0000031Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment from Dr. E. Lundquist to the National Bioresource Project of Japan: slow-growing.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceLE
WBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkOriginally classified as homozygous viable by the National Bioresource Project of Japan. Comment to the NBP from Dr. Y. Jin: unable to homozygous the mutants.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceCZ
FX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment from Dr. E. Lundquist to the National Bioresource Project of Japan: semi-sterile.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceLE
WBPhenotype:0001524Paper_evidenceWBPaper00051118
Curator_confirmedWBPerson38423
RemarkLethargus duration increased by 72%; total sleep increased by 133%; Bout duration increased by 59% (Table 2A)Paper_evidenceWBPaper00051118
Curator_confirmedWBPerson38423
Phenotype_not_observedWBPhenotype:0000104Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the National Bioresource Project of Japan: Dr. H.C. Korswagen: no ALM/PLM polarity defects in the F1Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceKN
WBPhenotype:0000469Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the National Bioresource Project of Japan: Dr. H.C. Korswagen: no QL migration defectPerson_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceKN
ReferenceWBPaper00051118
Remark8118/8119-8449/8450 (331 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele