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WormBase Tree Display for Variation: WBVar00251537

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Name Class

WBVar00251537NamePublic_nametm2691
Other_nameCE02308:p.Leu29PhefsTer53
T01E8.4.1:c.87_390del
HGVSgCHROMOSOME_II:g.10239251_10239602del
Sequence_detailsSMapS_parentSequenceT01E8
Flanking_sequencesaccatttcgagcgttttcaatgctccaaagaattgtcgttgtggtaaataggtgaaaaga
Mapping_targetT01E8
Source_location7CHROMOSOME_II1023925010239603Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm2691_external
tm2691_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq2691
NBP_allele
StatusLive
AffectsGeneWBGene00003177
TranscriptT01E8.4.1 (11)
InteractorWBInteraction000519899
IsolationMutagenTMP/UV
GeneticsMapII
DescriptionPhenotypeWBPhenotype:0000315Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
RemarkAnimals exhibit variable touch insensitivity; some animals respond to many touches while others fail to respond after a few touches. The severity of the phenotype increases at higher temperatures.Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0005237PATO:0000460Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
Temperature_sensitiveHeat_sensitivePaper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
WBPhenotype:0000633Paper_evidenceWBPaper00045955
Curator_confirmedWBPerson557
RemarkBranch defects scored in PLM neuron.Paper_evidenceWBPaper00045955
Curator_confirmedWBPerson557
PenetranceIncompletePaper_evidenceWBPaper00045955
Curator_confirmedWBPerson557
WBPhenotype:0000905Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
RemarkAnimals exhibit variable touch insensitivity; some animals respond to many touches while others fail to respond after a few touches. The severity of the phenotype increases at higher temperatures.Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0005237PATO:0000460Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
Temperature_sensitiveHeat_sensitivePaper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
WBPhenotype:0001933Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
RemarkAnimals exhibit variable touch insensitivity; some animals respond to many touches while others fail to respond after a few touches. The severity of the phenotype increases at higher temperatures.Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0005237PATO:0000460Paper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
Temperature_sensitiveHeat_sensitivePaper_evidenceWBPaper00035070
Curator_confirmedWBPerson712
Phenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000275Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComments to the National Bioresource Project of Japan: Dr. W. Vermeulen: not sensitive to UV-irradiation.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
ReferenceWBPaper00035070
WBPaper00045955
Remark31422/31423-31774/31775 (352 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele