Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00252101

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00252101NamePublic_nametm3414
Other_nameCE39414:p.Met326_His474del
CE39415:p.Met326_His474del
T24C4.6a.2:c.975_1421del
T24C4.6a.1:c.975_1421del
T24C4.6b.1:c.975_1421del
HGVSgCHROMOSOME_III:g.884726_885172del
Sequence_detailsSMapS_parentSequenceT24C4
Flanking_sequencesaagtgacgatgcattgcctctagaacgagatggcatatattcggaaccgcgtgatagaga
Mapping_targetT24C4
Source_location7CHROMOSOME_III884725885173Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm3414_external
tm3414_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq3414
NBP_allele
StatusLive
AffectsGeneWBGene00020762
TranscriptT24C4.6a.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScT24C4.6a.1:c.975_1421del
HGVSpCE39414:p.Met326_His474del
cDNA_position998-1444
CDS_position975-1421
Protein_position325-474
Exon_number5/9
Codon_changecaTATGACTGAACTGAGAATTCTTGACGTATCCCAATCAAACCGCGACTCCGGCCTCTACCCACATCCCGTCACGACACTTAACAAGTTGATTGTTAGTCTGAAGTATTTGACGCATCTGGATATTTCATCTACGAACCTTGCCACCCAACCATCTTCTCATGATAATCCGGCACGTTACAGAGAATCCGTTCGAACAGATATTTGTGGTCTCCAATCATTAGTCCGCCCATTGAAATATCTGGGTCTATTCAATTGTGAAAGTGCCAGCCATGTCAGAGAAATACCAGCAGAAGTTGTGTCAGGAGATGCGAACGAGGATCAAGTGATCACTTCCCTCCAAATGTACAAAGATCGGGCTGGTTTATTGCAAAACGTGCTAAACGAGAGTTATCAATTGTATCGATTCGGAAATAGTAATCCGTTGACACGTCATACCGAGGCTCTGCAt/cat
Amino_acid_changeHMTELRILDVSQSNRDSGLYPHPVTTLNKLIVSLKYLTHLDISSTNLATQPSSHDNPARYRESVRTDICGLQSLVRPLKYLGLFNCESASHVREIPAEVVSGDANEDQVITSLQMYKDRAGLLQNVLNESYQLYRFGNSNPLTRHTEALH/H
T24C4.6b.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScT24C4.6b.1:c.975_1421del
HGVSpCE39415:p.Met326_His474del
cDNA_position998-1444
CDS_position975-1421
Protein_position325-474
Exon_number5/8
Codon_changecaTATGACTGAACTGAGAATTCTTGACGTATCCCAATCAAACCGCGACTCCGGCCTCTACCCACATCCCGTCACGACACTTAACAAGTTGATTGTTAGTCTGAAGTATTTGACGCATCTGGATATTTCATCTACGAACCTTGCCACCCAACCATCTTCTCATGATAATCCGGCACGTTACAGAGAATCCGTTCGAACAGATATTTGTGGTCTCCAATCATTAGTCCGCCCATTGAAATATCTGGGTCTATTCAATTGTGAAAGTGCCAGCCATGTCAGAGAAATACCAGCAGAAGTTGTGTCAGGAGATGCGAACGAGGATCAAGTGATCACTTCCCTCCAAATGTACAAAGATCGGGCTGGTTTATTGCAAAACGTGCTAAACGAGAGTTATCAATTGTATCGATTCGGAAATAGTAATCCGTTGACACGTCATACCGAGGCTCTGCAt/cat
Amino_acid_changeHMTELRILDVSQSNRDSGLYPHPVTTLNKLIVSLKYLTHLDISSTNLATQPSSHDNPARYRESVRTDICGLQSLVRPLKYLGLFNCESASHVREIPAEVVSGDANEDQVITSLQMYKDRAGLLQNVLNESYQLYRFGNSNPLTRHTEALH/H
T24C4.6a.2VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScT24C4.6a.2:c.975_1421del
HGVSpCE39414:p.Met326_His474del
cDNA_position1002-1448
CDS_position975-1421
Protein_position325-474
Exon_number5/8
Codon_changecaTATGACTGAACTGAGAATTCTTGACGTATCCCAATCAAACCGCGACTCCGGCCTCTACCCACATCCCGTCACGACACTTAACAAGTTGATTGTTAGTCTGAAGTATTTGACGCATCTGGATATTTCATCTACGAACCTTGCCACCCAACCATCTTCTCATGATAATCCGGCACGTTACAGAGAATCCGTTCGAACAGATATTTGTGGTCTCCAATCATTAGTCCGCCCATTGAAATATCTGGGTCTATTCAATTGTGAAAGTGCCAGCCATGTCAGAGAAATACCAGCAGAAGTTGTGTCAGGAGATGCGAACGAGGATCAAGTGATCACTTCCCTCCAAATGTACAAAGATCGGGCTGGTTTATTGCAAAACGTGCTAAACGAGAGTTATCAATTGTATCGATTCGGAAATAGTAATCCGTTGACACGTCATACCGAGGCTCTGCAt/cat
Amino_acid_changeHMTELRILDVSQSNRDSGLYPHPVTTLNKLIVSLKYLTHLDISSTNLATQPSSHDNPARYRESVRTDICGLQSLVRPLKYLGLFNCESASHVREIPAEVVSGDANEDQVITSLQMYKDRAGLLQNVLNESYQLYRFGNSNPLTRHTEALH/H
IsolationMutagenTMP/UV
GeneticsMapIII
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000643Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the National Bioresource Project of Japan from Dr. E.T. Kipreos: normal locomotion.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment to the National Bioresource Project of Japan from Dr. E.T. Kipreos: fertile.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Remark18887/18888-19334/19335 (447 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele