WormBase Tree Display for Variation: WBVar00252101
expand all nodes | collapse all nodes | view schema
WBVar00252101 | Name | Public_name | tm3414 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | CE39414:p.Met326_His474del | |||||||
CE39415:p.Met326_His474del | ||||||||
T24C4.6a.2:c.975_1421del | ||||||||
T24C4.6a.1:c.975_1421del | ||||||||
T24C4.6b.1:c.975_1421del | ||||||||
HGVSg | CHROMOSOME_III:g.884726_885172del | |||||||
Sequence_details | SMap | S_parent | Sequence | T24C4 | ||||
Flanking_sequences | aagtgacgatgcattgcctctagaacgaga | tggcatatattcggaaccgcgtgatagaga | ||||||
Mapping_target | T24C4 | |||||||
Source_location | 7 | CHROMOSOME_III | 884725 | 885173 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Deletion | |||||||
PCR_product | tm3414_external | |||||||
tm3414_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 3414 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00020762 | ||||||
Transcript | T24C4.6a.1 | VEP_consequence | inframe_deletion | |||||
VEP_impact | MODERATE | |||||||
HGVSc | T24C4.6a.1:c.975_1421del | |||||||
HGVSp | CE39414:p.Met326_His474del | |||||||
cDNA_position | 998-1444 | |||||||
CDS_position | 975-1421 | |||||||
Protein_position | 325-474 | |||||||
Exon_number | 5/9 | |||||||
Codon_change | caTATGACTGAACTGAGAATTCTTGACGTATCCCAATCAAACCGCGACTCCGGCCTCTACCCACATCCCGTCACGACACTTAACAAGTTGATTGTTAGTCTGAAGTATTTGACGCATCTGGATATTTCATCTACGAACCTTGCCACCCAACCATCTTCTCATGATAATCCGGCACGTTACAGAGAATCCGTTCGAACAGATATTTGTGGTCTCCAATCATTAGTCCGCCCATTGAAATATCTGGGTCTATTCAATTGTGAAAGTGCCAGCCATGTCAGAGAAATACCAGCAGAAGTTGTGTCAGGAGATGCGAACGAGGATCAAGTGATCACTTCCCTCCAAATGTACAAAGATCGGGCTGGTTTATTGCAAAACGTGCTAAACGAGAGTTATCAATTGTATCGATTCGGAAATAGTAATCCGTTGACACGTCATACCGAGGCTCTGCAt/cat | |||||||
Amino_acid_change | HMTELRILDVSQSNRDSGLYPHPVTTLNKLIVSLKYLTHLDISSTNLATQPSSHDNPARYRESVRTDICGLQSLVRPLKYLGLFNCESASHVREIPAEVVSGDANEDQVITSLQMYKDRAGLLQNVLNESYQLYRFGNSNPLTRHTEALH/H | |||||||
T24C4.6b.1 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | T24C4.6b.1:c.975_1421del | |||||||
HGVSp | CE39415:p.Met326_His474del | |||||||
cDNA_position | 998-1444 | |||||||
CDS_position | 975-1421 | |||||||
Protein_position | 325-474 | |||||||
Exon_number | 5/8 | |||||||
Codon_change | caTATGACTGAACTGAGAATTCTTGACGTATCCCAATCAAACCGCGACTCCGGCCTCTACCCACATCCCGTCACGACACTTAACAAGTTGATTGTTAGTCTGAAGTATTTGACGCATCTGGATATTTCATCTACGAACCTTGCCACCCAACCATCTTCTCATGATAATCCGGCACGTTACAGAGAATCCGTTCGAACAGATATTTGTGGTCTCCAATCATTAGTCCGCCCATTGAAATATCTGGGTCTATTCAATTGTGAAAGTGCCAGCCATGTCAGAGAAATACCAGCAGAAGTTGTGTCAGGAGATGCGAACGAGGATCAAGTGATCACTTCCCTCCAAATGTACAAAGATCGGGCTGGTTTATTGCAAAACGTGCTAAACGAGAGTTATCAATTGTATCGATTCGGAAATAGTAATCCGTTGACACGTCATACCGAGGCTCTGCAt/cat | |||||||
Amino_acid_change | HMTELRILDVSQSNRDSGLYPHPVTTLNKLIVSLKYLTHLDISSTNLATQPSSHDNPARYRESVRTDICGLQSLVRPLKYLGLFNCESASHVREIPAEVVSGDANEDQVITSLQMYKDRAGLLQNVLNESYQLYRFGNSNPLTRHTEALH/H | |||||||
T24C4.6a.2 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | T24C4.6a.2:c.975_1421del | |||||||
HGVSp | CE39414:p.Met326_His474del | |||||||
cDNA_position | 1002-1448 | |||||||
CDS_position | 975-1421 | |||||||
Protein_position | 325-474 | |||||||
Exon_number | 5/8 | |||||||
Codon_change | caTATGACTGAACTGAGAATTCTTGACGTATCCCAATCAAACCGCGACTCCGGCCTCTACCCACATCCCGTCACGACACTTAACAAGTTGATTGTTAGTCTGAAGTATTTGACGCATCTGGATATTTCATCTACGAACCTTGCCACCCAACCATCTTCTCATGATAATCCGGCACGTTACAGAGAATCCGTTCGAACAGATATTTGTGGTCTCCAATCATTAGTCCGCCCATTGAAATATCTGGGTCTATTCAATTGTGAAAGTGCCAGCCATGTCAGAGAAATACCAGCAGAAGTTGTGTCAGGAGATGCGAACGAGGATCAAGTGATCACTTCCCTCCAAATGTACAAAGATCGGGCTGGTTTATTGCAAAACGTGCTAAACGAGAGTTATCAATTGTATCGATTCGGAAATAGTAATCCGTTGACACGTCATACCGAGGCTCTGCAt/cat | |||||||
Amino_acid_change | HMTELRILDVSQSNRDSGLYPHPVTTLNKLIVSLKYLTHLDISSTNLATQPSSHDNPARYRESVRTDICGLQSLVRPLKYLGLFNCESASHVREIPAEVVSGDANEDQVITSLQMYKDRAGLLQNVLNESYQLYRFGNSNPLTRHTEALH/H | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | III | ||||||
Description | Phenotype_not_observed | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as homozygous viable by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
WBPhenotype:0000643 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comment to the National Bioresource Project of Japan from Dr. E.T. Kipreos: normal locomotion. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
WBPhenotype:0000688 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comment to the National Bioresource Project of Japan from Dr. E.T. Kipreos: fertile. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
Remark | 18887/18888-19334/19335 (447 bp deletion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |