WormBase Tree Display for Variation: WBVar00252456

WBVar00252456 Name: Public_name: tm3863
    Other_name: F09E8.7b.1:c.998_1243-11del
      F09E8.7a.1:c.1073_1318-11del
    HGVSg: CHROMOSOME_IV:g.13175064_13175492del
  Sequence_details: SMap: S_parent: Sequence: F58D2
    Flanking_sequences: aacttccaatcatctcggaactgaaattat ggtgcggacgctgcatgcacatcagtaatg
    Mapping_target: F58D2
    Source_location: 7 CHROMOSOME_IV 13175063 13175493 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3863_external
      tm3863_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3863
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002974
    Transcript: F09E8.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F09E8.7a.1:c.1073_1318-11del
        cDNA_position: 1322-?
        CDS_position: 1073-?
        Protein_position: 358-?
        Intron_number: 6-7/9
        Exon_number: 6-7/10
      F09E8.7b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F09E8.7b.1:c.998_1243-11del
        cDNA_position: 1172-?
        CDS_position: 998-?
        Protein_position: 333-?
        Intron_number: 7-8/10
        Exon_number: 7-8/11
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: [F58D2] 1291/1292-[F58D2] 1720/1721 (429 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele