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WormBase Tree Display for Variation: WBVar00275142

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Name Class

WBVar00275142EvidencePaper_evidenceWBPaper00003757
NamePublic_namewd44
Other_nameCE01560:p.Trp20Ter
F26C11.2.1:c.59delinsA
HGVSgCHROMOSOME_II:g.9900199delinsT
Sequence_detailsSMapS_parentSequenceF26C11
Flanking_sequencesacgctgagccaaaaattatcaacgacatttgcagatttctggaaatcacaaattaattca
Mapping_targetF26C11
Type_of_mutationSubstitutionggrr
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00028648
LaboratoryNC
StatusLive
AffectsGeneWBGene00006744
TranscriptF26C11.2.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScF26C11.2.1:c.59delinsA
HGVSpCE01560:p.Trp20Ter
cDNA_position178-179
CDS_position59-60
Protein_position20
Exon_number2/8
Codon_changetGG/tAG
Amino_acid_changeW/*
GeneticsInterpolated_map_positionII1.77067
ReferenceWBPaper00003757
WBPaper00061175
Remarkwd44 comprises a nonsense mutation of W(20) to either an opal or an amber stop codon.Paper_evidenceWBPaper00003757
Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00006744 Amber_UAG_or_Opal_UGA W(20) to stopPaper_evidenceWBPaper00003757
Created by WBPerson51134 from the NN_VFP_triage_pipeline
Variation stub/paper connection generated from the May 2021 NN VFP dataset.
MethodSubstitution_allele