WormBase Tree Display for Variation: WBVar00275322
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| WBVar00275322 | Evidence | Paper_evidence | WBPaper00001691 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | y100 | |||||
| Other_name | CE08389:p.Trp1972Ter | ||||||
| C25D7.3.1:c.5915G>A | |||||||
| HGVSg | CHROMOSOME_V:g.15040180C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | C25D7 | |||
| Flanking_sequences | tccgtatgactgcacaatcacaggtgtcgt | ggcacatccagagtatattaagagaagatt | |||||
| Mapping_target | C25D7 | ||||||
| Type_of_mutation | Substitution | g | a | ||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | TY | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00004747 | |||||
| WBGene00305285 | |||||||
| Transcript | C25D7.3.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | C25D7.3.1:c.5915G>A | ||||||
| HGVSp | CE08389:p.Trp1972Ter | ||||||
| cDNA_position | 6027 | ||||||
| CDS_position | 5915 | ||||||
| Protein_position | 1972 | ||||||
| Exon_number | 14/17 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| C25D7.19 | |||||||
| Genetics | Interpolated_map_position | V | 7.18921 | ||||
| Mapping_data | In_multi_point | 1913 | |||||
| 1914 | |||||||
| In_pos_neg_data | 4303 | ||||||
| Description | Phenotype | WBPhenotype:0000066 | Person_evidence | WBPerson261 | |||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | XX inviable or dumpy,no masculinization | Person_evidence | WBPerson261 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| WBPhenotype:0000583 | Paper_evidence | WBPaper00001691 | |||||
| Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | XX inviable or dumpy,no masculinization | Person_evidence | WBPerson261 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| WBPhenotype:0000718 | Paper_evidence | WBPaper00001691 | |||||
| WBPaper00001708 | |||||||
| Curator_confirmed | WBPerson712 | ||||||
| Phenotype_not_observed | WBPhenotype:0001572 | Person_evidence | WBPerson261 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | no masculinization | Person_evidence | WBPerson261 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00014003 | ||||||
| WBPaper00014084 | |||||||
| WBPaper00013844 | |||||||
| WBPaper00001708 | |||||||
| WBPaper00001691 | |||||||
| WBPaper00013845 | |||||||
| Method | Substitution_allele |
