WormBase Tree Display for Variation: WBVar00296622

WBVar00296622 Name: Public_name: ok3140
    Other_name: R12B2.1a.1:c.925+59_1290del
      R12B2.1a.2:c.925+59_1290del
    HGVSg: CHROMOSOME_III:g.5818539_5819256del
  Sequence_details: SMap: S_parent: Sequence: R12B2
    Flanking_sequences: agaggtggctgctctctctctctgactttt ttcgtccgatccgggtacctagactacact
    Mapping_target: R12B2
    Type_of_mutation: Deletion
    PCR_product: ok3140_external
      ok3140_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037312
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00004858
    Transcript: R12B2.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-162
        CDS_position: ?-162
        Protein_position: ?-54
        Intron_number: 1/4
        Exon_number: 1-2/5
      R12B2.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R12B2.1a.1:c.925+59_1290del
        cDNA_position: ?-1292
        CDS_position: ?-1290
        Protein_position: ?-430
        Intron_number: 7-9/13
        Exon_number: 8-10/14
      R12B2.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R12B2.1a.2:c.925+59_1290del
        cDNA_position: ?-1335
        CDS_position: ?-1290
        Protein_position: ?-430
        Intron_number: 7-9/13
        Exon_number: 8-10/14
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele