WormBase Tree Display for Variation: WBVar00310039

WBVar00310039 Evidence: Paper_evidence: WBPaper00036201
  Name: Public_name: otn13218
    Other_name: OH8547_123330
      Y54G2A.17b.1:c.1240-1733G>A
      Y54G2A.17a.1:c.1180-1733G>A
      Y54G2A.17a.3:c.1180-1733G>A
      Y54G2A.17a.2:c.1180-1733G>A
    HGVSg: CHROMOSOME_IV:g.2877116C>T
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: TTTTTAATTGCATTATTAGACATAAAATTGTCTGAAAACACCGAATTTCA AATGAAACTTCTTGAAAACTTCTCAAAAAACAGCTAAGCATGGCTCAAAA
    Mapping_target: Y54G2A
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00029556
    Laboratory: OTN
    Analysis: WGS_Hobert
    Status: Live
  Affects: Gene: WBGene00021882
    Transcript: Y54G2A.17a.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17a.3:c.1180-1733G>A
        Intron_number: 4/7
      Y54G2A.17b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17b.1:c.1240-1733G>A
        Intron_number: 5/7
      Y54G2A.17a.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17a.2:c.1180-1733G>A
        Intron_number: 5/8
      Y54G2A.17a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17a.1:c.1180-1733G>A
        Intron_number: 5/8
  Genetics: Map: IV
  Reference: WBPaper00036201
  Method: WGS_Hobert