WormBase Tree Display for Variation: WBVar00310040

WBVar00310040 Evidence: Paper_evidence: WBPaper00036201
  Name: Public_name: otn13219
    Other_name: OH8547_123462
      Y54G2A.36.2:c.-294-1157C>T
      Y54G2A.36.5:c.-1451C>T
      Y54G2A.36.3:c.-283-1168C>T
      Y54G2A.36.4:c.-248-1157C>T
      Y54G2A.36.1:c.-320-1131C>T
      Y54G2A.20:n.509G>A
    HGVSg: CHROMOSOME_IV:g.2899742C>T
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: TGATTTCGTGACCGTAATGCTGAAAGCACGCCTCAACCGTAAACTTCTGG CTAGCTGCACCAACTGAAATTACTTAATTTTAATCAATTTTCAGACAGAA
    Mapping_target: Y54G2A
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00029556
    Laboratory: OTN
    Analysis: WGS_Hobert
    Status: Live
  Affects: Gene: WBGene00021898
      WBGene00021885
    Transcript: Y54G2A.36.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.36.2:c.-294-1157C>T
        Intron_number: 1/4
      Y54G2A.36.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.36.1:c.-320-1131C>T
        Intron_number: 1/4
      Y54G2A.36.5 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.36.5:c.-1451C>T
        cDNA_position: 1639
        Exon_number: 1/4
      Y54G2A.36.4 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.36.4:c.-248-1157C>T
        Intron_number: 1/5
      Y54G2A.36.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.36.3:c.-283-1168C>T
        Intron_number: 1/4
    Pseudogene: Y54G2A.20 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.20:n.509G>A
        cDNA_position: 509
        Exon_number: 3/14
  Genetics: Map: IV
  Reference: WBPaper00036201
  Method: WGS_Hobert