WormBase Tree Display for Variation: WBVar00317430

WBVar00317430 Name: Public_name: tm5039
    Other_name: C38D4.1a.1:c.409-49_547-21del
    HGVSg: CHROMOSOME_III:g.4784321_4784648del
  Sequence_details: SMap: S_parent: Sequence: C38D4
    Flanking_sequences: ctaccacatactgaaatttaaaactgcgtt ttcgcttttcattaaatataacttaaatca
    Mapping_target: C38D4
    Source_location: 7 CHROMOSOME_III 4784320 4784649 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5039_external
      tm5039_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5039
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00008003
    Transcript: C38D4.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C38D4.1a.1:c.409-49_547-21del
        Intron_number: 3-4/7
        Exon_number: 4/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 1984/1985-2312/2313 (328 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele