WormBase Tree Display for Variation: WBVar00319808

WBVar00319808 Evidence: Paper_evidence: WBPaper00037659
  Name: Public_name: snx2236
    Other_name: IS657_945
      C52E12.t2.1:n.35T>C
      C52E12.2a.2:c.1470-87T>C
      C52E12.8:n.49A>G
      C52E12.2b.1:c.1470-87T>C
      C52E12.2a.1:c.1470-87T>C
    HGVSg: CHROMOSOME_II:g.7003307T>C
  Sequence_details: SMap: S_parent: Sequence: C52E12
    Flanking_sequences: ACTGAATAAAACATGCGGGGGTATAGCTCAGTGGTAGAGCGCTCCCTTAG ATGGGAGAGGGCTGGGGTTCAATTCCCCATACCTCCAGAATAATTTTTGC
    Mapping_target: C52E12
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022164
    Laboratory: IS
    Analysis: WGS_Jarriault
    Status: Live
  Affects: Gene: WBGene00006831
      WBGene00196158
      WBGene00022966
    Transcript: C52E12.2a.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52E12.2a.2:c.1470-87T>C
        Intron_number: 8/23
      C52E12.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52E12.2b.1:c.1470-87T>C
        Intron_number: 8/24
      C52E12.t2 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: C52E12.t2.1:n.35T>C
        cDNA_position: 35
        Exon_number: 1/1
      C52E12.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52E12.2a.1:c.1470-87T>C
        Intron_number: 8/23
      C52E12.8 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: C52E12.8:n.49A>G
        cDNA_position: 49
        Exon_number: 1/1
  Genetics: Map: II
  Reference: WBPaper00037659
  Method: WGS_Jarriault