WormBase Tree Display for Variation: WBVar00600869

WBVar00600869 Name: Public_name: tm5487
    Other_name: T21C12.1c.2:c.936_1128+58del
      T21C12.1d.1:c.936_1128+58del
      T21C12.1e.1:c.936_1129-18del
      T21C12.1k.1:c.936_1128+58del
      T21C12.1f.1:c.563-1993_563-1692del
      T21C12.1c.1:c.936_1128+58del
      T21C12.1m.1:c.432_624+58del
      T21C12.1o.1:c.59-1993_59-1692del
    HGVSg: CHROMOSOME_III:g.10528593_10528894del
  Sequence_details: SMap: S_parent: Sequence: T21C12
    Flanking_sequences: aaccaataattcgatgccaaaagtgtctta aacacattcttatttagtcatacgaaatga
    Mapping_target: T21C12
    Source_location: 7 CHROMOSOME_III 10528592 10528895 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5487_external
      tm5487_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5487
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006784
    Transcript: T21C12.1k.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T21C12.1k.1:c.936_1128+58del
        cDNA_position: 936-?
        CDS_position: 936-?
        Protein_position: 312-?
        Intron_number: 7-8/11
        Exon_number: 7-8/12
      T21C12.1m.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T21C12.1m.1:c.432_624+58del
        cDNA_position: 432-?
        CDS_position: 432-?
        Protein_position: 144-?
        Intron_number: 3-4/8
        Exon_number: 3-4/9
      T21C12.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T21C12.1c.1:c.936_1128+58del
        cDNA_position: 1142-?
        CDS_position: 936-?
        Protein_position: 312-?
        Intron_number: 8-9/18
        Exon_number: 8-9/19
      T21C12.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T21C12.1e.1:c.936_1129-18del
        cDNA_position: 1061-?
        CDS_position: 936-?
        Protein_position: 312-?
        Intron_number: 8-9/19
        Exon_number: 8-9/20
      T21C12.1c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T21C12.1c.2:c.936_1128+58del
        cDNA_position: 1061-?
        CDS_position: 936-?
        Protein_position: 312-?
        Intron_number: 8-9/14
        Exon_number: 8-9/15
      T21C12.1o.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T21C12.1o.1:c.59-1993_59-1692del
        Intron_number: 1/5
      T21C12.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T21C12.1d.1:c.936_1128+58del
        cDNA_position: 1142-?
        CDS_position: 936-?
        Protein_position: 312-?
        Intron_number: 8-9/17
        Exon_number: 8-9/18
      T21C12.1f.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T21C12.1f.1:c.563-1993_563-1692del
        Intron_number: 6/11
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 7917/7918-8219/8220 (302 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele