WormBase Tree Display for Variation: WBVar00601174

WBVar00601174 Name: Public_name: gk3223
    Other_name: K11D9.3.1:c.781-29_880del
      K11D9.3.2:c.781-29_880del
    HGVSg: CHROMOSOME_III:g.10798334_10798462del
  Sequence_details: SMap: S_parent: Sequence: CHROMOSOME_III
    Flanking_sequences: AGAGATCACCAGATATTGTGTTGGAGTTGA CAGTGAGGAAATTGCTTCAAAACATGCTTT
    Mapping_target: CHROMOSOME_III
    CGH_deleted_probes: GATCAGTTGCATATCCACAGATTGAGGCAACAAACCACATGGACCAGAGG TTGGAGCATTTCCATTACTGTCTGAAACAATTTTGTTGATTGAGCGTTTT
    CGH_flanking_probes: GAAAAGAATCTGATTGACGAAGAGATCACCAGATATTGTGTTGGAGTTGA ATTTTTGTAAAATAGATCTCACCTTCGAATGTTCAATTCTCTTATGCTCA
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037550
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo array CGH
    Status: Live
  Affects: Gene: WBGene00010772
    Transcript: K11D9.3.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K11D9.3.2:c.781-29_880del
        cDNA_position: ?-982
        CDS_position: ?-880
        Protein_position: ?-294
        Intron_number: 6/10
        Exon_number: 7/11
      K11D9.3.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K11D9.3.1:c.781-29_880del
        cDNA_position: ?-881
        CDS_position: ?-880
        Protein_position: ?-294
        Intron_number: 5/9
        Exon_number: 6/10
  Isolation: Mutagen: UV/TMP
  Genetics: Map: III
  Remark: Flanking probes represent the nearest array oligo sequences present in the deletion chromosome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data.
  Method: CGH_allele