WormBase Tree Display for Variation: WBVar01267972
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WBVar01267972 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01267972 | |||||
Other_name (11) | |||||||
HGVSg | CHROMOSOME_III:g.10526361G>A | ||||||
Sequence_details | SMap | S_parent | Sequence | T21C12 | |||
Flanking_sequences | CTGAGATTGGCTCAAGGGACCTGAATAATTGTGAATAAGGGGGTACTGTA | ATAGAGGTTACTGTAACTGTGATACTTTAAAAGTAAACAGTACTATGTAT | |||||
Mapping_target | T21C12 | ||||||
Type_of_mutation | Substitution | g | A | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539103119 | |||
Status | Live | ||||||
Affects | Gene | WBGene00006784 | |||||
Transcript | T21C12.1l.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1l.1:c.439+420G>A | ||||||
Intron_number | 4/8 | ||||||
T21C12.1k.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1k.1:c.563-1609G>A | ||||||
Intron_number | 5/11 | ||||||
T21C12.1m.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1m.1:c.59-1609G>A | ||||||
Intron_number | 1/8 | ||||||
T21C12.1c.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1c.1:c.563-1609G>A | ||||||
Intron_number | 6/18 | ||||||
T21C12.1e.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1e.1:c.563-1609G>A | ||||||
Intron_number | 6/19 | ||||||
T21C12.1c.2 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1c.2:c.563-1609G>A | ||||||
Intron_number | 6/14 | ||||||
T21C12.1b.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1b.1:c.943+420G>A | ||||||
Intron_number | 9/14 | ||||||
T21C12.1o.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1o.1:c.58+2036G>A | ||||||
Intron_number | 1/5 | ||||||
T21C12.1d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1d.1:c.563-1609G>A | ||||||
Intron_number | 6/17 | ||||||
T21C12.1f.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T21C12.1f.1:c.562+2036G>A | ||||||
Intron_number | 6/11 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |