WormBase Tree Display for Variation: WBVar01419889
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| WBVar01419889 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01419889 | ||||
| Other_name | cewivar00680589 | |||||
| ZK524.2d.1:c.1235+138del | ||||||
| ZK524.2j.1:c.1199+138del | ||||||
| ZK524.2c.1:c.212+138del | ||||||
| ZK524.2e.1:c.1235+138del | ||||||
| ZK524.2h.1:c.212+138del | ||||||
| ZK524.2k.1:c.1190+138del | ||||||
| ZK524.2f.1:c.1244+138del | ||||||
| ZK524.2i.1:c.1244+138del | ||||||
| ZK524.2a.1:c.1235+138del | ||||||
| HGVSg | CHROMOSOME_I:g.7433766del | |||||
| Sequence_details | SMap | S_parent | Sequence | C44E1 | ||
| Flanking_sequences | TCTGATCTCATTTGACTCATATCTCGGTTGTCTTTAATTTGATCAGAAAG | AAAAAAAATAGACCAAAGGGGGTGCAAGACTAATAAAAGAAAGGAAACTA | ||||
| Mapping_target | C44E1 | |||||
| Type_of_mutation | Deletion | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||
| WGS_De_Bono | ||||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539069512 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00006752 | ||||
| Transcript | ZK524.2e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2e.1:c.1235+138del | |||||
| Intron_number | 9/29 | |||||
| ZK524.2c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2c.1:c.212+138del | |||||
| Intron_number | 1/21 | |||||
| ZK524.2f.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2f.1:c.1244+138del | |||||
| Intron_number | 9/29 | |||||
| ZK524.2j.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2j.1:c.1199+138del | |||||
| Intron_number | 9/28 | |||||
| ZK524.2k.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2k.1:c.1190+138del | |||||
| Intron_number | 9/28 | |||||
| ZK524.2a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2a.1:c.1235+138del | |||||
| Intron_number | 9/29 | |||||
| ZK524.2i.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2i.1:c.1244+138del | |||||
| Intron_number | 9/28 | |||||
| ZK524.2d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2d.1:c.1235+138del | |||||
| Intron_number | 9/30 | |||||
| ZK524.2h.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | ZK524.2h.1:c.212+138del | |||||
| Intron_number | 1/20 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
