WormBase Tree Display for Variation: WBVar01451457
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WBVar01451457 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01451457 | ||||
Other_name | Y54G2A.10a.1:c.126+158T>A | |||||
Y54G2A.10b.1:c.-467T>A | ||||||
HGVSg | CHROMOSOME_IV:g.2800003T>A | |||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||
Flanking_sequences | AAAATTTTGAATTTTTGTGAATTCTCGTCA | ATCTGATGTAATGTACGCAATTACGTACCC | ||||
Mapping_target | Y54G2A | |||||
Type_of_mutation | Substitution | t | a | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00031279 | From_analysis | WGS_Andersen | |||
WBStrain00031284 | From_analysis | WGS_Andersen | ||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | WGS_Andersen | |||||
DB_info | Database | dbSNP_rs | rs | 193337114 | ||
dbSNP_ss | ss | 295513033 | ||||
Status | Live | |||||
Affects | Gene | WBGene00021875 | ||||
Transcript | Y54G2A.10a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | Y54G2A.10a.1:c.126+158T>A | |||||
Intron_number | 2/5 | |||||
Y54G2A.10b.1 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y54G2A.10b.1:c.-467T>A | |||||
cDNA_position | 298 | |||||
Exon_number | 1/5 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |