WormBase Tree Display for Variation: WBVar01451504
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WBVar01451504 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar01451504 | |||
Other_name | cewivar00036255 | ||||
Y54G2A.36.4:c.-249+1306G>A | |||||
Y54G2A.36.3:c.-284+1306G>A | |||||
Y54G2A.36.2:c.-295+1306G>A | |||||
Y54G2A.36.5:c.-2085G>A | |||||
Y54G2A.36.1:c.-321+1306G>A | |||||
Y54G2A.20:n.1006+14C>T | |||||
HGVSg | CHROMOSOME_IV:g.2899108G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | AAAAAAAACTGAATTCTCAAATGAACTTTT | TTTTATTGTAGACCTGCTGGCTCTCCTCTA | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Substitution | g | a | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Natural_variant | |||||
Origin (7) | |||||
Affects | Gene | WBGene00021898 | |||
WBGene00021885 | |||||
Transcript | Y54G2A.36.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.2:c.-295+1306G>A | ||||
Intron_number | 1/4 | ||||
Y54G2A.36.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.1:c.-321+1306G>A | ||||
Intron_number | 1/4 | ||||
Y54G2A.36.5 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.5:c.-2085G>A | ||||
cDNA_position | 1005 | ||||
Exon_number | 1/4 | ||||
Y54G2A.36.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.4:c.-249+1306G>A | ||||
Intron_number | 1/5 | ||||
Y54G2A.36.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.36.3:c.-284+1306G>A | ||||
Intron_number | 1/4 | ||||
Pseudogene | Y54G2A.20 | VEP_consequence | intron_variant,non_coding_transcript_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.20:n.1006+14C>T | ||||
Intron_number | 5/13 | ||||
Reference | WBPaper00040707 | ||||
Method | WGS_Andersen |