WormBase Tree Display for Variation: WBVar01451751
expand all nodes | collapse all nodes | view schema
| WBVar01451751 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01451751 | ||||
| Other_name | Y37E11C.1c.1:c.1182G>A | |||||
| CE31639:p.Ser394= | ||||||
| CE21557:p.Ser725= | ||||||
| CE31638:p.Ser550= | ||||||
| Y37E11C.1b.1:c.1650G>A | ||||||
| Y37E11C.1a.1:c.2175G>A | ||||||
| HGVSg | CHROMOSOME_IV:g.3524572G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | M57 | ||
| Flanking_sequences | GGATGCCAGTGGAAAGCGAGTCCTCGAGTC | AGCCGAGCACAGAGCTCACAGGAGAATTCG | ||||
| Mapping_target | M57 | |||||
| Type_of_mutation | Substitution | g | a | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00004601 | From_analysis | WGS_Andersen | |||
| WBStrain00005834 | From_analysis | WGS_Andersen | ||||
| WBStrain00031286 | From_analysis | WGS_Andersen | ||||
| WBStrain00031301 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | WGS_Andersen | |||||
| DB_info | Database | dbSNP_rs | rs | 193337408 | ||
| dbSNP_ss | ss | 295513327 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00006769 | ||||
| Transcript | Y37E11C.1c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | Y37E11C.1c.1:c.1182G>A | |||||
| HGVSp | CE31639:p.Ser394= | |||||
| cDNA_position | 1182 | |||||
| CDS_position | 1182 | |||||
| Protein_position | 394 | |||||
| Exon_number | 3/4 | |||||
| Codon_change | tcG/tcA | |||||
| Amino_acid_change | S | |||||
| Y37E11C.1b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y37E11C.1b.1:c.1650G>A | |||||
| HGVSp | CE31638:p.Ser550= | |||||
| cDNA_position | 1650 | |||||
| CDS_position | 1650 | |||||
| Protein_position | 550 | |||||
| Exon_number | 5/6 | |||||
| Codon_change | tcG/tcA | |||||
| Amino_acid_change | S | |||||
| Y37E11C.1a.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y37E11C.1a.1:c.2175G>A | |||||
| HGVSp | CE21557:p.Ser725= | |||||
| cDNA_position | 2175 | |||||
| CDS_position | 2175 | |||||
| Protein_position | 725 | |||||
| Exon_number | 9/11 | |||||
| Codon_change | tcG/tcA | |||||
| Amino_acid_change | S | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
