WormBase Tree Display for Variation: WBVar01452701
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| WBVar01452701 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01452701 | ||||
| Other_name | C11D2.6k.1:c.26-2170C>T | |||||
| C11D2.6l.1:c.26-2170C>T | ||||||
| C11D2.6j.1:c.26-2170C>T | ||||||
| C11D2.6i.1:c.26-2170C>T | ||||||
| C11D2.6m.1:c.80-2170C>T | ||||||
| C11D2.6n.1:c.80-2170C>T | ||||||
| C11D2.6o.1:c.80-2170C>T | ||||||
| C11D2.6p.1:c.80-2170C>T | ||||||
| HGVSg | CHROMOSOME_IV:g.6173576G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | C11D2 | ||
| Flanking_sequences | GAAAATGACGGAGTTGATCGGCCTTAATAG | TTCTTTTGACTATACTCAAATGAGAAATCC | ||||
| Mapping_target | C11D2 | |||||
| Type_of_mutation | Substitution | g | a | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023075 | From_analysis | WGS_Andersen | |||
| WBStrain00031279 | From_analysis | WGS_Andersen | ||||
| WBStrain00031284 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | WGS_Andersen | |||||
| DB_info | Database | dbSNP_rs | rs | 193338358 | ||
| dbSNP_ss | ss | 295514277 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00006809 | ||||
| Transcript | C11D2.6o.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | C11D2.6o.1:c.80-2170C>T | |||||
| Intron_number | 2/28 | |||||
| C11D2.6p.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | C11D2.6p.1:c.80-2170C>T | |||||
| Intron_number | 2/28 | |||||
| C11D2.6i.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | C11D2.6i.1:c.26-2170C>T | |||||
| Intron_number | 1/28 | |||||
| C11D2.6l.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | C11D2.6l.1:c.26-2170C>T | |||||
| Intron_number | 1/27 | |||||
| C11D2.6n.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | C11D2.6n.1:c.80-2170C>T | |||||
| Intron_number | 2/27 | |||||
| C11D2.6j.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | C11D2.6j.1:c.26-2170C>T | |||||
| Intron_number | 1/26 | |||||
| C11D2.6m.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | C11D2.6m.1:c.80-2170C>T | |||||
| Intron_number | 2/29 | |||||
| C11D2.6k.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | C11D2.6k.1:c.26-2170C>T | |||||
| Intron_number | 1/27 | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
