WormBase Tree Display for Variation: WBVar01472133
expand all nodes | collapse all nodes | view schema
WBVar01472133 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01472133 | ||||
Other_name | cewivar00129418 | |||||
CE28236:p.Asp450= | ||||||
F54B11.3a.1:c.1350T>C | ||||||
CE27761:p.Asp450= | ||||||
F54B11.3b.1:c.1350T>C | ||||||
HGVSg | CHROMOSOME_X:g.13586734T>C | |||||
Sequence_details | SMap | S_parent | Sequence | F54B11 | ||
Flanking_sequences | ACCGGCACCAAGTTCATCAGATGTTCATGA | GCTGTTGGTGTTTCTTGGAGAATTCGAATT | ||||
Mapping_target | F54B11 | |||||
Type_of_mutation | Substitution | t | c | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (25) | ||||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | Million_mutation_project_reanalysis | |||||
WGS_Andersen | ||||||
DB_info | Database | dbSNP_rs | rs | 193357435 | ||
dbSNP_ss | ss | 295533354 | ||||
Status | Live | |||||
Affects | Gene | WBGene00006816 | ||||
Transcript | F54B11.3a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | |||||
HGVSc | F54B11.3a.1:c.1350T>C | |||||
HGVSp | CE28236:p.Asp450= | |||||
cDNA_position | 1355 | |||||
CDS_position | 1350 | |||||
Protein_position | 450 | |||||
Exon_number | 5/12 | |||||
Codon_change | gaT/gaC | |||||
Amino_acid_change | D | |||||
F54B11.3b.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | F54B11.3b.1:c.1350T>C | |||||
HGVSp | CE27761:p.Asp450= | |||||
cDNA_position | 1355 | |||||
CDS_position | 1350 | |||||
Protein_position | 450 | |||||
Exon_number | 5/9 | |||||
Codon_change | gaT/gaC | |||||
Amino_acid_change | D | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |