WormBase Tree Display for Variation: WBVar01514009
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| WBVar01514009 | Name | Public_name | WBVar01514009 | |||||
|---|---|---|---|---|---|---|---|---|
| Other_name | cewivar00036258 | |||||||
| Y54G2A.36.2:c.-294-1201C>T | ||||||||
| Y54G2A.36.5:c.-1495C>T | ||||||||
| Y54G2A.36.1:c.-320-1175C>T | ||||||||
| Y54G2A.20:n.553G>A | ||||||||
| Y54G2A.36.4:c.-248-1201C>T | ||||||||
| Y54G2A.36.3:c.-283-1212C>T | ||||||||
| HGVSg | CHROMOSOME_IV:g.2899698C>T | |||||||
| Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
| Flanking_sequences | AGGTCAAACTCAAATCTGCCACCTTGATTT | GTGACCGTAATGCTGAAAGCACGCCTCAAC | ||||||
| Mapping_target | Y54G2A | |||||||
| Source_location | 225 | CHROMOSOME_IV | 2899696 | 2899696 | From_analysis | Million_mutation_project_reanalysis | ||
| Type_of_mutation | Substitution | C | T | |||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00022883 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | ||||||
| Laboratory | VC | |||||||
| Analysis | Million_mutation_project_reanalysis | |||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00021898 | ||||||
| WBGene00021885 | ||||||||
| Transcript | Y54G2A.36.2 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | |||||||
| HGVSc | Y54G2A.36.2:c.-294-1201C>T | |||||||
| Intron_number | 1/4 | |||||||
| Y54G2A.36.1 | VEP_consequence | intron_variant | ||||||
| VEP_impact | MODIFIER | |||||||
| HGVSc | Y54G2A.36.1:c.-320-1175C>T | |||||||
| Intron_number | 1/4 | |||||||
| Y54G2A.36.5 | VEP_consequence | 5_prime_UTR_variant | ||||||
| VEP_impact | MODIFIER | |||||||
| HGVSc | Y54G2A.36.5:c.-1495C>T | |||||||
| cDNA_position | 1595 | |||||||
| Exon_number | 1/4 | |||||||
| Y54G2A.36.4 | VEP_consequence | intron_variant | ||||||
| VEP_impact | MODIFIER | |||||||
| HGVSc | Y54G2A.36.4:c.-248-1201C>T | |||||||
| Intron_number | 1/5 | |||||||
| Y54G2A.36.3 | VEP_consequence | intron_variant | ||||||
| VEP_impact | MODIFIER | |||||||
| HGVSc | Y54G2A.36.3:c.-283-1212C>T | |||||||
| Intron_number | 1/4 | |||||||
| Pseudogene | Y54G2A.20 | VEP_consequence | non_coding_transcript_exon_variant | |||||
| VEP_impact | MODIFIER | |||||||
| HGVSc | Y54G2A.20:n.553G>A | |||||||
| cDNA_position | 553 | |||||||
| Exon_number | 3/14 | |||||||
| Method | WGS_Flibotte |
