WormBase Tree Display for Variation: WBVar01922212
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WBVar01922212 | Name | Public_name | WBVar01922212 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00640622 | |||||||
Y54G2A.11b.1:c.-1611_-1602del | ||||||||
Y54G2A.11a.1:c.1209+45_1209+54del | ||||||||
Y54G2A.11b.3:c.-16+45_-16+54del | ||||||||
Y54G2A.11b.2:c.-16+45_-16+54del | ||||||||
HGVSg | CHROMOSOME_IV:g.2768111_2768120del | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | GAATTCGAATTTTCTAATTAAACTTTGAAA | AATTTTAATTTTTGTCGAATTTTGGGGGGT | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2768109 | 2768118 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022883 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022902 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021876 | ||||||
Transcript | Y54G2A.11b.3 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.11b.3:c.-16+45_-16+54del | |||||||
Intron_number | 2/5 | |||||||
Y54G2A.11b.1 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.11b.1:c.-1611_-1602del | |||||||
cDNA_position | 1311-1320 | |||||||
Exon_number | 4/7 | |||||||
Y54G2A.11a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.11a.1:c.1209+45_1209+54del | |||||||
Intron_number | 5/7 | |||||||
Y54G2A.11b.2 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.11b.2:c.-16+45_-16+54del | |||||||
Intron_number | 3/6 | |||||||
Method | WGS_Flibotte |