WormBase Tree Display for Variation: WBVar02121021

WBVar02121021 Name: Public_name: WBVar02121021
    Other_name: cewivar00851944
    HGVSg: CHROMOSOME_III:g.13772102_13782101del
  Sequence_details: SMap: S_parent: Sequence: CHROMOSOME_III
    Flanking_sequences: AACCCCAGAACTGGTCCGACGTTCTCAAAA TACTTATCTGAAAGTTAGCCAGTACAGCGAACATTTTCACAAGAAACTATGTTTTGCTATCTCAACCCAGTTTTGAGTTATACCAAAATTTGGGGGTGGCCGTATCATTATGTGGAGCACTGTATTTATAAACATTTTTAAAAAATTATTCGAAAATTCTAAAAATTTTTAGAAATTTCTCGAATATTCCCGTATTTTAGGAGTAAAAAAAGGTTCTTTTTTGAGATTTTTCAAACGAAATAGTGAAAAAATTTCAATGATAAACAGGAAAAAATCTTCTTTTTTTGAAAAAATTGTATTTCTTAAATAAAAATTACTTTATTTGGCATTTCAAGTGAAAGTTTGATTTTTTTTCAAATTAAAATTTTTATACAAAAAAAAATTCCAAAAAAGTTCAACATTAAATTTCAATGCTTTGAAAAATAAAAAT
    Mapping_target: CHROMOSOME_III
    Source_location: 225 CHROMOSOME_III 13772001 13782000 From_analysis: Million_mutation_project_reanalysis
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004600 From_analysis: Million_mutation_project_reanalysis
    Laboratory: VC
    Analysis: Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00007065
      WBGene00007025
      WBGene00003967
      WBGene00305233
    Transcript: 3R5.3
      K08E3.7b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 455-?
        CDS_position: 437-?
        Protein_position: 146-?
        Intron_number: 4-6/6
        Exon_number: 4-7/7
      K08E3.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 449-?
        CDS_position: 437-?
        Protein_position: 146-?
        Intron_number: 4-7/8
        Exon_number: 4-9/9
      K08E3.8.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-7/8
        Exon_number: 1-9/9
      3R5.1b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-3/4
        Exon_number: 1-5/5
      3R5.1a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-3/4
        Exon_number: 1-5/5
      K08E3.7c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 251-?
        CDS_position: 251-?
        Protein_position: 84-?
        Intron_number: 2-5/5
        Exon_number: 2-6/6
      K08E3.8.2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-8/9
        Exon_number: 1-10/10
      K08E3.7b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 455-?
        CDS_position: 437-?
        Protein_position: 146-?
        Intron_number: 4-7/7
        Exon_number: 4-8/8
  Remark: The boundaries of this variant have been identified only approximately
    This allele is a copy number variation determined from whole-genome sequence data, and should be assumed to be non-homozygous
  Method: WGS_Flibotte