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WormBase Tree Display for Variation: WBVar02144976

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Name Class

WBVar02144976NamePublic_nametm7799
Other_nameF09E8.7b.1:c.556-1_662del
F09E8.7a.1:c.556-1_662del
HGVSgCHROMOSOME_IV:g.13176515_13176622del
Sequence_detailsSMapS_parentSequenceF58D2
Flanking_sequencestggaattcaatgcgacttctgtcagatgtctggaaaatattggagtttaaaattttttta
Mapping_targetF58D2
Source_location7CHROMOSOME_IV1317651413176623Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm7799_external
tm7799_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq7799
NBP_allele
StatusLive
AffectsGeneWBGene00002974
TranscriptF09E8.7a.1VEP_consequencesplice_acceptor_variant,coding_sequence_variant
VEP_impactHIGH
HGVScF09E8.7a.1:c.556-1_662del
cDNA_position?-911
CDS_position?-662
Protein_position?-221
Intron_number4/9
Exon_number5/10
F09E8.7b.1VEP_consequencesplice_acceptor_variant,coding_sequence_variant
VEP_impactHIGH
HGVScF09E8.7b.1:c.556-1_662del
cDNA_position?-836
CDS_position?-662
Protein_position?-221
Intron_number4/10
Exon_number5/11
IsolationMutagenTMP/UV
GeneticsMapIV
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National BioResource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark39101/39102-39209/39210 (108 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
Old Mapping_target F09E8 updated based on the VEP analysis pipeline to F58D2.
MethodNBP_knockout_allele