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WormBase Tree Display for Variation: WBVar02146988

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Name Class

WBVar02146988NamePublic_nametm4928
Other_nameZK662.4.1:c.1531_2338delinsTTTT
CE15381:p.Ile511_Lys779delinsPhe
ZK662.4.2:c.1531_2338delinsTTTT
HGVSgCHROMOSOME_X:g.15728670_15729477delinsTTTT
Sequence_detailsSMapS_parentSequenceZK678
Flanking_sequencescgtgaatacttggcaagtcctgcagtttcttacccacgtcgcaaagctcatcaccatcaa
Mapping_targetZK678
Source_location7CHROMOSOME_X1569497415695783Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationInsertionTTTT
Deletion
PCR_producttm4928_external
tm4928_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq4928
NBP_allele
StatusLive
AffectsGeneWBGene00023497
TranscriptZK662.4.1VEP_consequenceprotein_altering_variant
VEP_impactMODERATE
HGVScZK662.4.1:c.1531_2338delinsTTTT
HGVSpCE15381:p.Ile511_Lys779delinsPhe
cDNA_position1537-2344
CDS_position1531-2338
Protein_position511-780
Exon_number6/10
Codon_changeATAGACGCTGGGTACTACTTTGGGAACGGTGGAAAATTCCAACACATCTGCCACACCTACTCTCATCAACGCCTCGAGAACTGCTTGGCACTTGCTGGAAACTATCAAACATTTCGTGGAAAAGGAGCATCGGTGGATGTCATTTCTCAATCAATGATTGAGACTTTAAATAACACTGCAAGTCGTCTTCAGAAGCAGGTTCACCTTGGTCTTTATGCACACGGAGTTGACAACATCTCTTCTGATCGAGATGTGCAATCCATTGTCGGCCATCACTACCCTCCGATGCCAACAGTTGCAAACTATGACATTCCACACGTGCCGAAAGAAGAAGAGAAGCCTCCAGTGGCTAACCTGCAAAGTACATCTAGCCCAGCGACGTCCTCTCCAACAATCATCCGCCCTCGTGCAGCACCTCCACCGAGAACACTGGCTCAAGGAAGACCAATCCCGTTGAATGGGAAAGAACTCAAGGCTGTTCCAATCAGGCAGATTCCGCTGCAAGTGAGGCCGTTGCCACCGAGACCAGCCAATGTGCCAATTGTGCCAAGGCCAACTGTTCCACAACAGTTTATCAAAGCACCAGCTCCGAAACCTATCACACTTCAAGCTGTTGTTTGCAGTATTCCAGAAAAGGAAATCAAGAAAGAAACTGAAGACGTAGCGCTGCTGGAGAAAATAAAGGATGAACCACTGGATGAAGACGATTTTAATCATCCTTCAACTGATCCGGTGCCAAACCGAACGACTGCTTCTTCACAAGGACCATCTTCGTATCCACGGAAAATTGTAGTACTGGCCTCAAAACta/TTTTta
Amino_acid_changeIDAGYYFGNGGKFQHICHTYSHQRLENCLALAGNYQTFRGKGASVDVISQSMIETLNNTASRLQKQVHLGLYAHGVDNISSDRDVQSIVGHHYPPMPTVANYDIPHVPKEEEKPPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIPLNGKELKAVPIRQIPLQVRPLPPRPANVPIVPRPTVPQQFIKAPAPKPITLQAVVCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPSTDPVPNRTTASSQGPSSYPRKIVVLASKL/FL
ZK662.4.2VEP_consequenceprotein_altering_variant
VEP_impactMODERATE
HGVScZK662.4.2:c.1531_2338delinsTTTT
HGVSpCE15381:p.Ile511_Lys779delinsPhe
cDNA_position1543-2350
CDS_position1531-2338
Protein_position511-780
Exon_number6/11
Codon_changeATAGACGCTGGGTACTACTTTGGGAACGGTGGAAAATTCCAACACATCTGCCACACCTACTCTCATCAACGCCTCGAGAACTGCTTGGCACTTGCTGGAAACTATCAAACATTTCGTGGAAAAGGAGCATCGGTGGATGTCATTTCTCAATCAATGATTGAGACTTTAAATAACACTGCAAGTCGTCTTCAGAAGCAGGTTCACCTTGGTCTTTATGCACACGGAGTTGACAACATCTCTTCTGATCGAGATGTGCAATCCATTGTCGGCCATCACTACCCTCCGATGCCAACAGTTGCAAACTATGACATTCCACACGTGCCGAAAGAAGAAGAGAAGCCTCCAGTGGCTAACCTGCAAAGTACATCTAGCCCAGCGACGTCCTCTCCAACAATCATCCGCCCTCGTGCAGCACCTCCACCGAGAACACTGGCTCAAGGAAGACCAATCCCGTTGAATGGGAAAGAACTCAAGGCTGTTCCAATCAGGCAGATTCCGCTGCAAGTGAGGCCGTTGCCACCGAGACCAGCCAATGTGCCAATTGTGCCAAGGCCAACTGTTCCACAACAGTTTATCAAAGCACCAGCTCCGAAACCTATCACACTTCAAGCTGTTGTTTGCAGTATTCCAGAAAAGGAAATCAAGAAAGAAACTGAAGACGTAGCGCTGCTGGAGAAAATAAAGGATGAACCACTGGATGAAGACGATTTTAATCATCCTTCAACTGATCCGGTGCCAAACCGAACGACTGCTTCTTCACAAGGACCATCTTCGTATCCACGGAAAATTGTAGTACTGGCCTCAAAACta/TTTTta
Amino_acid_changeIDAGYYFGNGGKFQHICHTYSHQRLENCLALAGNYQTFRGKGASVDVISQSMIETLNNTASRLQKQVHLGLYAHGVDNISSDRDVQSIVGHHYPPMPTVANYDIPHVPKEEEKPPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIPLNGKELKAVPIRQIPLQVRPLPPRPANVPIVPRPTVPQQFIKAPAPKPITLQAVVCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPSTDPVPNRTTASSQGPSSYPRKIVVLASKL/FL
IsolationMutagenTMP/UV
GeneticsMapX
Remark1178/1179-TTTT-1986/1987 (808 bp deletion + 4 bp insertion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele