WormBase Tree Display for Variation: WBVar02146988
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WBVar02146988 | Name | Public_name | tm4928 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | ZK662.4.1:c.1531_2338delinsTTTT | |||||||
CE15381:p.Ile511_Lys779delinsPhe | ||||||||
ZK662.4.2:c.1531_2338delinsTTTT | ||||||||
HGVSg | CHROMOSOME_X:g.15728670_15729477delinsTTTT | |||||||
Sequence_details | SMap | S_parent | Sequence | ZK678 | ||||
Flanking_sequences | cgtgaatacttggcaagtcctgcagtttct | tacccacgtcgcaaagctcatcaccatcaa | ||||||
Mapping_target | ZK678 | |||||||
Source_location | 7 | CHROMOSOME_X | 15694974 | 15695783 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Insertion | TTTT | ||||||
Deletion | ||||||||
PCR_product | tm4928_external | |||||||
tm4928_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 4928 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00023497 | ||||||
Transcript | ZK662.4.1 | VEP_consequence | protein_altering_variant | |||||
VEP_impact | MODERATE | |||||||
HGVSc | ZK662.4.1:c.1531_2338delinsTTTT | |||||||
HGVSp | CE15381:p.Ile511_Lys779delinsPhe | |||||||
cDNA_position | 1537-2344 | |||||||
CDS_position | 1531-2338 | |||||||
Protein_position | 511-780 | |||||||
Exon_number | 6/10 | |||||||
Codon_change | ATAGACGCTGGGTACTACTTTGGGAACGGTGGAAAATTCCAACACATCTGCCACACCTACTCTCATCAACGCCTCGAGAACTGCTTGGCACTTGCTGGAAACTATCAAACATTTCGTGGAAAAGGAGCATCGGTGGATGTCATTTCTCAATCAATGATTGAGACTTTAAATAACACTGCAAGTCGTCTTCAGAAGCAGGTTCACCTTGGTCTTTATGCACACGGAGTTGACAACATCTCTTCTGATCGAGATGTGCAATCCATTGTCGGCCATCACTACCCTCCGATGCCAACAGTTGCAAACTATGACATTCCACACGTGCCGAAAGAAGAAGAGAAGCCTCCAGTGGCTAACCTGCAAAGTACATCTAGCCCAGCGACGTCCTCTCCAACAATCATCCGCCCTCGTGCAGCACCTCCACCGAGAACACTGGCTCAAGGAAGACCAATCCCGTTGAATGGGAAAGAACTCAAGGCTGTTCCAATCAGGCAGATTCCGCTGCAAGTGAGGCCGTTGCCACCGAGACCAGCCAATGTGCCAATTGTGCCAAGGCCAACTGTTCCACAACAGTTTATCAAAGCACCAGCTCCGAAACCTATCACACTTCAAGCTGTTGTTTGCAGTATTCCAGAAAAGGAAATCAAGAAAGAAACTGAAGACGTAGCGCTGCTGGAGAAAATAAAGGATGAACCACTGGATGAAGACGATTTTAATCATCCTTCAACTGATCCGGTGCCAAACCGAACGACTGCTTCTTCACAAGGACCATCTTCGTATCCACGGAAAATTGTAGTACTGGCCTCAAAACta/TTTTta | |||||||
Amino_acid_change | IDAGYYFGNGGKFQHICHTYSHQRLENCLALAGNYQTFRGKGASVDVISQSMIETLNNTASRLQKQVHLGLYAHGVDNISSDRDVQSIVGHHYPPMPTVANYDIPHVPKEEEKPPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIPLNGKELKAVPIRQIPLQVRPLPPRPANVPIVPRPTVPQQFIKAPAPKPITLQAVVCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPSTDPVPNRTTASSQGPSSYPRKIVVLASKL/FL | |||||||
ZK662.4.2 | VEP_consequence | protein_altering_variant | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | ZK662.4.2:c.1531_2338delinsTTTT | |||||||
HGVSp | CE15381:p.Ile511_Lys779delinsPhe | |||||||
cDNA_position | 1543-2350 | |||||||
CDS_position | 1531-2338 | |||||||
Protein_position | 511-780 | |||||||
Exon_number | 6/11 | |||||||
Codon_change | ATAGACGCTGGGTACTACTTTGGGAACGGTGGAAAATTCCAACACATCTGCCACACCTACTCTCATCAACGCCTCGAGAACTGCTTGGCACTTGCTGGAAACTATCAAACATTTCGTGGAAAAGGAGCATCGGTGGATGTCATTTCTCAATCAATGATTGAGACTTTAAATAACACTGCAAGTCGTCTTCAGAAGCAGGTTCACCTTGGTCTTTATGCACACGGAGTTGACAACATCTCTTCTGATCGAGATGTGCAATCCATTGTCGGCCATCACTACCCTCCGATGCCAACAGTTGCAAACTATGACATTCCACACGTGCCGAAAGAAGAAGAGAAGCCTCCAGTGGCTAACCTGCAAAGTACATCTAGCCCAGCGACGTCCTCTCCAACAATCATCCGCCCTCGTGCAGCACCTCCACCGAGAACACTGGCTCAAGGAAGACCAATCCCGTTGAATGGGAAAGAACTCAAGGCTGTTCCAATCAGGCAGATTCCGCTGCAAGTGAGGCCGTTGCCACCGAGACCAGCCAATGTGCCAATTGTGCCAAGGCCAACTGTTCCACAACAGTTTATCAAAGCACCAGCTCCGAAACCTATCACACTTCAAGCTGTTGTTTGCAGTATTCCAGAAAAGGAAATCAAGAAAGAAACTGAAGACGTAGCGCTGCTGGAGAAAATAAAGGATGAACCACTGGATGAAGACGATTTTAATCATCCTTCAACTGATCCGGTGCCAAACCGAACGACTGCTTCTTCACAAGGACCATCTTCGTATCCACGGAAAATTGTAGTACTGGCCTCAAAACta/TTTTta | |||||||
Amino_acid_change | IDAGYYFGNGGKFQHICHTYSHQRLENCLALAGNYQTFRGKGASVDVISQSMIETLNNTASRLQKQVHLGLYAHGVDNISSDRDVQSIVGHHYPPMPTVANYDIPHVPKEEEKPPVANLQSTSSPATSSPTIIRPRAAPPPRTLAQGRPIPLNGKELKAVPIRQIPLQVRPLPPRPANVPIVPRPTVPQQFIKAPAPKPITLQAVVCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPSTDPVPNRTTASSQGPSSYPRKIVVLASKL/FL | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | X | ||||||
Remark | 1178/1179-TTTT-1986/1987 (808 bp deletion + 4 bp insertion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |