WormBase Tree Display for Variation: WBVar02148278
expand all nodes | collapse all nodes | view schema
| WBVar02148278 | Name | Public_name | tm10532 | |||||
|---|---|---|---|---|---|---|---|---|
| Other_name | CE30956:p.Thr547HisfsTer3 | |||||||
| F16F9.2.1:c.1638_2029del | ||||||||
| HGVSg | CHROMOSOME_X:g.8453036_8453427del | |||||||
| Sequence_details | SMap | S_parent | Sequence | F16F9 | ||||
| Flanking_sequences | cttctgtagtcgttgaaccttcagtagtga | gtagttggttcctctgtagtaattgccttc | ||||||
| Mapping_target | F16F9 | |||||||
| Source_location | 7 | CHROMOSOME_X | 8453035 | 8453428 | Inferred_automatically | National_Bioresource_Project | ||
| Type_of_mutation | Deletion | |||||||
| PCR_product | tm10532_external | |||||||
| tm10532_internal | ||||||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Allele | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Laboratory | FX | |||||||
| Author | Mitani S | |||||||
| DB_info | Database | National_Bioresource_Project | seq | 10532 | ||||
| NBP_allele | ||||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00001068 | ||||||
| Transcript | F16F9.2.1 | VEP_consequence | frameshift_variant | |||||
| VEP_impact | HIGH | |||||||
| HGVSc | F16F9.2.1:c.1638_2029del | |||||||
| HGVSp | CE30956:p.Thr547HisfsTer3 | |||||||
| cDNA_position | 1638-2029 | |||||||
| CDS_position | 1638-2029 | |||||||
| Protein_position | 546-677 | |||||||
| Exon_number | 5/9 | |||||||
| Codon_change | acTACTGAAGAATCATCCACAACTGAAGAAGTAACTACCACAGAGGAGCCAGCTAACACTGGAAATCCGCCCACAACTGAAAACCCAACAACCACAGAACAGCCAACCAGTACTGCCGAGTCAACTACCACGGCACTACCATTCACGACTGAGCAGACAGTTACCACAGAGGAACCAACAACTGCGGAAAAGTCAACCGCTACTCAGAAGCCAACAACCACACAGGAGTCAGTTTCCACGGAAAAGACATCCACTACCAAAAAGGCATCCACCACAGAGGAGCCAACCACTACTGATGAGCCAACCACCACGACAGAGTCATCCACAACCGGCAAGGCAACAACCCCGGAGTTGTCAACTACTTCTGAAGAGACGACCACCACGGAATTGAAAAtc/actc | |||||||
| Amino_acid_change | TTEESSTTEEVTTTEEPANTGNPPTTENPTTTEQPTSTAESTTTALPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTTTTESSTTGKATTPELSTTSEETTTTELKI/TX | |||||||
| Isolation | Mutagen | TMP/UV | ||||||
| Genetics | Map | X | ||||||
| Description | Phenotype_not_observed | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | ||||
| Curator_confirmed | WBPerson712 | |||||||
| Remark | Classified as homozygous viable by the National BioResource Project of Japan. | Person_evidence | WBPerson7743 | |||||
| Curator_confirmed | WBPerson712 | |||||||
| Remark | 14435/14436-14827/14828 (392 bp deletion) | |||||||
| This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
| Method | NBP_knockout_allele |
