WormBase Tree Display for Variation: WBVar02150913

WBVar02150913 Name: Public_name: tm5052
    Other_name: R13A1.4c.1:c.454_588+18delinsCT
      R13A1.4d.1:c.331_465+18delinsCT
      R13A1.4b.1:c.448_582+18delinsCT
      R13A1.4a.1:c.451_585+18delinsCT
    HGVSg: CHROMOSOME_IV:g.7200451_7200647delinsCT
  Sequence_details: SMap: S_parent: Sequence: R13A1
    Flanking_sequences: ttcttattacaaacctattggacaatgtca ttattggaatttctgaaaatctgaatttgg
    Mapping_target: R13A1
    Source_location: 7 CHROMOSOME_IV 7200450 7200648 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: CT
      Deletion
    PCR_product: tm5052_external
      tm5052_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5052
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006748
    Transcript: R13A1.4d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R13A1.4d.1:c.331_465+18delinsCT
        cDNA_position: 331-?
        CDS_position: 331-?
        Protein_position: 111-?
        Intron_number: 3-4/17
        Exon_number: 3-4/18
      R13A1.4c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R13A1.4c.1:c.454_588+18delinsCT
        cDNA_position: 454-?
        CDS_position: 454-?
        Protein_position: 152-?
        Intron_number: 4-5/18
        Exon_number: 4-5/19
      R13A1.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R13A1.4a.1:c.451_585+18delinsCT
        cDNA_position: 451-?
        CDS_position: 451-?
        Protein_position: 151-?
        Intron_number: 5-6/20
        Exon_number: 5-6/21
      R13A1.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R13A1.4b.1:c.448_582+18delinsCT
        cDNA_position: 448-?
        CDS_position: 448-?
        Protein_position: 150-?
        Intron_number: 5-6/19
        Exon_number: 5-6/20
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Remark: 9690/9691-CT-9887/9888 (197 bp deletion + 2 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele