WormBase Tree Display for Variation: WBVar02151732

WBVar02151732 Name: Public_name: tm11398
    Other_name: F59A2.6d.1:c.1440-629_3531+490del
      F59A2.6a.1:c.1566-629_3658-191del
      F59A2.6c.1:c.1440-629_3532-191del
      F59A2.6b.1:c.1566-629_3657+490del
    HGVSg: CHROMOSOME_III:g.3416172_3420934del
  Sequence_details: SMap: S_parent: Sequence: CHROMOSOME_III
    Flanking_sequences: aattttttttctttgaaattctgaaaaaaa attttccccgatttttctccaatttttggc
    Mapping_target: CHROMOSOME_III
    Source_location: 7 CHROMOSOME_III 3416171 3420935 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11398_external
      tm11398_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11398
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00219986
      WBGene00010306
    Transcript: F59A2.6a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59A2.6a.1:c.1566-629_3658-191del
        Intron_number: 8-14/19
        Exon_number: 9-14/20
      F59A2.6c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59A2.6c.1:c.1440-629_3532-191del
        Intron_number: 7-13/18
        Exon_number: 8-13/19
      F59A2.6b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59A2.6b.1:c.1566-629_3657+490del
        Intron_number: 7-13/17
        Exon_number: 8-13/18
      F59A2.7 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F59A2.6d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59A2.6d.1:c.1440-629_3531+490del
        Intron_number: 7-13/17
        Exon_number: 8-13/18
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Remark: [F59A2]22798/22799-[K01A11]2290/2291 (4763 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
    Old Mapping_target F59A2 updated based on the VEP analysis pipeline to CHROMOSOME_III.
  Method: NBP_knockout_allele