WormBase Tree Display for Variation: WBVar02152226

WBVar02152226 Name: Public_name: tm11927
    Other_name: B0496.3g.1:c.2773+108_2774-125del
      B0496.3f.1:c.2803_2890+9del
      B0496.3i.1:c.2854_2941+9del
      B0496.3d.1:c.2803_2890+9del
      B0496.3b.1:c.2803_2890+9del
      B0496.3h.1:c.2773+108_2774-125del
      B0496.3a.2:c.2680_2767+9del
      B0496.3a.1:c.2680_2767+9del
      B0496.3h.2:c.2773+108_2774-125del
      B0496.3e.1:c.3520_3607+9del
    HGVSg: CHROMOSOME_IV:g.7437967_7438063del
  Sequence_details: SMap: S_parent: Sequence: B0496
    Flanking_sequences: gctgtggtgccagtgattcatcaaactact tcttgctattcaaaacccaattctcaccaa
    Mapping_target: B0496
    Source_location: 7 CHROMOSOME_IV 7437966 7438064 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11927_external
      tm11927_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11927
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006814
    Transcript: B0496.3h.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3h.2:c.2773+108_2774-125del
        Intron_number: 13/27
      B0496.3a.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0496.3a.2:c.2680_2767+9del
        cDNA_position: 2694-?
        CDS_position: 2680-?
        Protein_position: 894-?
        Intron_number: 14/27
        Exon_number: 14/28
      B0496.3b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0496.3b.1:c.2803_2890+9del
        cDNA_position: 2803-?
        CDS_position: 2803-?
        Protein_position: 935-?
        Intron_number: 14/30
        Exon_number: 14/31
      B0496.3i.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0496.3i.1:c.2854_2941+9del
        cDNA_position: 2854-?
        CDS_position: 2854-?
        Protein_position: 952-?
        Intron_number: 14/29
        Exon_number: 14/30
      B0496.3g.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3g.1:c.2773+108_2774-125del
        Intron_number: 16/31
      B0496.3a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0496.3a.1:c.2680_2767+9del
        cDNA_position: 3149-?
        CDS_position: 2680-?
        Protein_position: 894-?
        Intron_number: 19/32
        Exon_number: 19/33
      B0496.3e.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0496.3e.1:c.3520_3607+9del
        cDNA_position: 3522-?
        CDS_position: 3520-?
        Protein_position: 1174-?
        Intron_number: 20/34
        Exon_number: 20/35
      B0496.3f.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0496.3f.1:c.2803_2890+9del
        cDNA_position: 2803-?
        CDS_position: 2803-?
        Protein_position: 935-?
        Intron_number: 14/28
        Exon_number: 14/29
      B0496.3h.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3h.1:c.2773+108_2774-125del
        Intron_number: 16/30
      B0496.3d.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0496.3d.1:c.2803_2890+9del
        cDNA_position: 2908-?
        CDS_position: 2803-?
        Protein_position: 935-?
        Intron_number: 17/32
        Exon_number: 17/33
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Remark: 21520/21521-21617/21618(97 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele