WormBase Tree Display for Variation: WBVar02152614

WBVar02152614 Name: Public_name: tm12356
    Other_name: F47A4.2.1:c.7983_8193del
      CE16058:p.Leu2662Ter
    HGVSg: CHROMOSOME_X:g.9813000_9813210del
  Sequence_details: SMap: S_parent: Sequence: F47A4
    Flanking_sequences: ctgttgggaatattgcccttgctgattcat cgcatttgttcttgtctaacacgttcttca
    Mapping_target: F47A4
    Source_location: 7 CHROMOSOME_X 9812999 9813211 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm12356_external
      tm12356_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 12356
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001081
    Transcript: F47A4.2.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: F47A4.2.1:c.7983_8193del
        HGVSp: CE16058:p.Leu2662Ter
        cDNA_position: 8086-8296
        CDS_position: 7983-8193
        Protein_position: 2661-2731
        Exon_number: 17/21
        Codon_change: cgATTGGAAGCTGAAGAAAGGGAACGTATTCGCCGCGCAGAAGAAGAACGAATTCAAAAAGAATTAGAAGATAAAGTCCGTCGTGAAAAAGAAGAAGCGGCTCGGCAAGAGAAAGAACGTCAAGAGCAAGAGGCTCGAATGCGAGAAGCTCGAGAAGCAGAACTTTCTCGGCAACGTATGGAACAACAACGTAGGAGCCAACAAAACCCGTAC/cg
        Amino_acid_change: RLEAEERERIRRAEEERIQKELEDKVRREKEEAARQEKERQEQEARMREAREAELSRQRMEQQRRSQQNPY/X
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Remark: 9771/9772-9982/9983(211 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele