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WormBase Tree Display for Variation: WBVar02152624

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Name Class

WBVar02152624NamePublic_nametm12366
Other_nameCE31267:p.Pro958GlnfsTer43
ZK377.2a.1:c.2873_3084delinsA
ZK377.2b.1:c.2873_3084delinsA
CE25688:p.Pro958GlnfsTer43
HGVSgCHROMOSOME_X:g.3453434_3453645delinsT
Sequence_detailsSMapS_parentSequenceZK377
Flanking_sequencestgttggcattgctggcgcgcgaagcattttgtgtcagcgaatagagagcctggccatttc
Mapping_targetZK377
Source_location7CHROMOSOME_X34534333453646Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationInsertionT
Deletion
PCR_producttm12366_external
tm12366_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq12366
NBP_allele
StatusLive
AffectsGeneWBGene00004729
TranscriptZK377.2b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScZK377.2b.1:c.2873_3084delinsA
HGVSpCE31267:p.Pro958GlnfsTer43
cDNA_position2958-3169
CDS_position2873-3084
Protein_position958-1028
Exon_number10/14
Codon_changecCAAATGCGCAAGACTTTTTCAACAATTGTGATGACTACAGTGGAACGATGCACAGACCAGGATCCGAGCATCACTATCATTATGCTCAACTGACTGGCGGACCTGGTAATGCGATGTCTACTTTTTATGGAAACCAATATCACGATGATCCATCTCCATATGCCACCACAACACTGGTCCTGTCGAACCAACAACCAGCTTGGCTCAATGAC/cA
Amino_acid_changePNAQDFFNNCDDYSGTMHRPGSEHHYHYAQLTGGPGNAMSTFYGNQYHDDPSPYATTTLVLSNQQPAWLND/X
ZK377.2a.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScZK377.2a.1:c.2873_3084delinsA
HGVSpCE25688:p.Pro958GlnfsTer43
cDNA_position2956-3167
CDS_position2873-3084
Protein_position958-1028
Exon_number10/14
Codon_changecCAAATGCGCAAGACTTTTTCAACAATTGTGATGACTACAGTGGAACGATGCACAGACCAGGATCCGAGCATCACTATCATTATGCTCAACTGACTGGCGGACCTGGTAATGCGATGTCTACTTTTTATGGAAACCAATATCACGATGATCCATCTCCATATGCCACCACAACACTGGTCCTGTCGAACCAACAACCAGCTTGGCTCAATGAC/cA
Amino_acid_changePNAQDFFNNCDDYSGTMHRPGSEHHYHYAQLTGGPGNAMSTFYGNQYHDDPSPYATTTLVLSNQQPAWLND/X
IsolationMutagenTMP/UV
GeneticsMapX
Remark[ZK813]31755/31756-T-[ZK377]1560/1561(212 bp deletion + 1 bp insertion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
Old Mapping_target ZK813 updated based on the VEP analysis pipeline to ZK377.
MethodNBP_knockout_allele