WormBase Tree Display for Variation: WBVar02152624
expand all nodes | collapse all nodes | view schema
WBVar02152624 | Name | Public_name | tm12366 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | CE31267:p.Pro958GlnfsTer43 | |||||||
ZK377.2a.1:c.2873_3084delinsA | ||||||||
ZK377.2b.1:c.2873_3084delinsA | ||||||||
CE25688:p.Pro958GlnfsTer43 | ||||||||
HGVSg | CHROMOSOME_X:g.3453434_3453645delinsT | |||||||
Sequence_details | SMap | S_parent | Sequence | ZK377 | ||||
Flanking_sequences | tgttggcattgctggcgcgcgaagcatttt | gtgtcagcgaatagagagcctggccatttc | ||||||
Mapping_target | ZK377 | |||||||
Source_location | 7 | CHROMOSOME_X | 3453433 | 3453646 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Insertion | T | ||||||
Deletion | ||||||||
PCR_product | tm12366_external | |||||||
tm12366_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 12366 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00004729 | ||||||
Transcript | ZK377.2b.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | ZK377.2b.1:c.2873_3084delinsA | |||||||
HGVSp | CE31267:p.Pro958GlnfsTer43 | |||||||
cDNA_position | 2958-3169 | |||||||
CDS_position | 2873-3084 | |||||||
Protein_position | 958-1028 | |||||||
Exon_number | 10/14 | |||||||
Codon_change | cCAAATGCGCAAGACTTTTTCAACAATTGTGATGACTACAGTGGAACGATGCACAGACCAGGATCCGAGCATCACTATCATTATGCTCAACTGACTGGCGGACCTGGTAATGCGATGTCTACTTTTTATGGAAACCAATATCACGATGATCCATCTCCATATGCCACCACAACACTGGTCCTGTCGAACCAACAACCAGCTTGGCTCAATGAC/cA | |||||||
Amino_acid_change | PNAQDFFNNCDDYSGTMHRPGSEHHYHYAQLTGGPGNAMSTFYGNQYHDDPSPYATTTLVLSNQQPAWLND/X | |||||||
ZK377.2a.1 | VEP_consequence | frameshift_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | ZK377.2a.1:c.2873_3084delinsA | |||||||
HGVSp | CE25688:p.Pro958GlnfsTer43 | |||||||
cDNA_position | 2956-3167 | |||||||
CDS_position | 2873-3084 | |||||||
Protein_position | 958-1028 | |||||||
Exon_number | 10/14 | |||||||
Codon_change | cCAAATGCGCAAGACTTTTTCAACAATTGTGATGACTACAGTGGAACGATGCACAGACCAGGATCCGAGCATCACTATCATTATGCTCAACTGACTGGCGGACCTGGTAATGCGATGTCTACTTTTTATGGAAACCAATATCACGATGATCCATCTCCATATGCCACCACAACACTGGTCCTGTCGAACCAACAACCAGCTTGGCTCAATGAC/cA | |||||||
Amino_acid_change | PNAQDFFNNCDDYSGTMHRPGSEHHYHYAQLTGGPGNAMSTFYGNQYHDDPSPYATTTLVLSNQQPAWLND/X | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | X | ||||||
Remark | [ZK813]31755/31756-T-[ZK377]1560/1561(212 bp deletion + 1 bp insertion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Old Mapping_target ZK813 updated based on the VEP analysis pipeline to ZK377. | ||||||||
Method | NBP_knockout_allele |