WormBase Tree Display for CDS: Y37E11C.1c
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| Y37E11C.1c | Evidence | Curator_confirmed | WBPerson4025 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | M57 | |||
| Structure | Source_exons | 1 | 89 | |||
| 3284 | 4179 | |||||
| 4693 | 5084 | |||||
| 5695 | 5889 | |||||
| DB_info | Database | SwissProt | UniProtIsoformAcc | Q01630-3 | ||
| TrEMBL | UniProtAcc | U4PLJ8 | ||||
| UniProt | UniProtAcc | U4PLJ8 | ||||
| AlphaFold | entry | U4PLJ8 | ||||
| Protein_id | CHROMOSOME_IV | CDH92977 | 2 | |||
| DB_remark | UNC-33 protein; contains similarity to Pfam domain PF01979 (Amidohydrolase family); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR011059 (Metal-dependent hydrolase, composite domain superfamily), IPR006680 (Amidohydrolase-related) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Feature_evidence | WBsf963289 | |||||
| Visible | Gene | WBGene00006769 | ||||
| Corresponding_transcript | Y37E11C.1c.1 | |||||
| Corresponding_protein | CE31639 | |||||
| Corresponding_PCR_product | cenix:151-a7 | |||||
| mv_CAA78520 | ||||||
| mv_CAA78521 | ||||||
| mv_CAA78522 | ||||||
| sjj_Y37E11C.1 | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | male_Nanopore_Roach_156301 | |||||
| L1_Nanopore_Roach_16932 | ||||||
| RNAi_result | WBRNAi00103588 | |||||
| WBRNAi00020239 | ||||||
| WBRNAi00086120 | ||||||
| WBRNAi00055924 | ||||||
| WBRNAi00089774 | ||||||
| WBRNAi00090316 | ||||||
| WBRNAi00030274 | ||||||
| WBRNAi00090157 | ||||||
| WBRNAi00089998 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Amidohydrolase-related domain-containing protein | Accession_evidence | UniProt | TR:U4PLJ8 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 02 Sep 2019 13:25:23 | WBPerson4025 | ||||
| Remark | [130916 gw3] Autoconversion from AG1201_M57.2.T10. Created this isoform based on the SL1 site. | Curator_confirmed | WBPerson4025 | |||
| Feature_evidence | WBsf175852 | |||||
| [190902 gw3] This CDS has been updated based on the Nanopore data and the papers which describe an isoform starting in exon 7. There is a TSS region defined by the Gu et al. data just upstream of the start of this isoform. | Paper_evidence | WBPaper00026866 | ||||
| WBPaper00001622 | ||||||
| WBPaper00040429 | ||||||
| Curator_confirmed | WBPerson4025 | |||||
| Method | curated |
