WormBase Tree Display for Sequence: Y40D12A
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| Y40D12A | DNA | Y40D12A | 9871 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00021503 | 2329 | 4950 | |
| WBGene00021502 | 5215 | 9852 | ||||
| WBGene00005263 | 623 | 2362 | ||||
| CDS_child (85) | ||||||
| Transcript | Y40D12A.1.1 | 5215 | 9852 | |||
| Y40D12A.2.1 | 2329 | 4950 | ||||
| Y40D12A.3.1 | 623 | 2362 | ||||
| PCR_product (14) | ||||||
| Allele (106) | ||||||
| Oligo_set | Aff_Y40D12A.1 | 6525 | 9233 | |||
| Aff_Y40D12A.2 | 3822 | 4867 | ||||
| Aff_Y40D12A.3 | 1173 | 2064 | ||||
| Feature_object | WBsf003627 | 5214 | 5215 | |||
| WBsf074525 | 5424 | 5424 | ||||
| WBsf075407 | 204 | 204 | ||||
| WBsf078302 | 198 | 198 | ||||
| WBsf078303 | 4940 | 4940 | ||||
| WBsf161652 | 8917 | 8918 | ||||
| WBsf166313 | 4904 | 4904 | ||||
| WBsf168420 | 2899 | 2899 | ||||
| WBsf168421 | 6136 | 6136 | ||||
| WBsf171004 | 5214 | 5215 | ||||
| WBsf175394 | 4903 | 4904 | ||||
| WBsf225129 | 133 | 193 | ||||
| WBsf225130 | 4868 | 4900 | ||||
| WBsf225131 | 4868 | 4940 | ||||
| WBsf246431 | 197 | 198 | ||||
| WBsf246432 | 4948 | 4949 | ||||
| WBsf246433 | 4901 | 4902 | ||||
| WBsf247640 | 8662 | 8663 | ||||
| WBsf618681 | 4914 | 4915 | ||||
| WBsf619432 | 215 | 216 | ||||
| WBsf958952 | 2469 | 2470 | ||||
| WBsf958953 | 4821 | 4820 | ||||
| WBsf394525 | 4884 | 5153 | ||||
| WBsf394598 | 6271 | 6474 | ||||
| WBsf396318 | 4891 | 5221 | ||||
| WBsf396682 | 4609 | 5307 | ||||
| WBsf397842 | 2157 | 2443 | ||||
| WBsf398329 | 4981 | 5247 | ||||
| WBsf400066 | 5001 | 5151 | ||||
| WBsf401726 | 4915 | 5222 | ||||
| WBsf403248 | 4930 | 5293 | ||||
| WBsf406515 | 5036 | 5159 | ||||
| WBsf407777 | 4915 | 5176 | ||||
| WBsf408703 | 2096 | 2490 | ||||
| WBsf410082 | 4992 | 5191 | ||||
| WBsf412921 | 4936 | 5213 | ||||
| WBsf413182 | 4885 | 5232 | ||||
| WBsf413985 | 4955 | 5202 | ||||
| WBsf416246 | 4955 | 5168 | ||||
| WBsf416803 | 4926 | 5256 | ||||
| WBsf421313 | 4977 | 5207 | ||||
| WBsf424681 | 2134 | 2464 | ||||
| WBsf426039 | 4960 | 5163 | ||||
| WBsf427164 | 4841 | 5351 | ||||
| WBsf428132 | 4814 | 5319 | ||||
| WBsf430121 | 4940 | 5226 | ||||
| WBsf431893 | 4950 | 5216 | ||||
| WBsf432730 | 4917 | 5241 | ||||
| WBsf434728 | 4914 | 5256 | ||||
| WBsf436387 | 4878 | 5293 | ||||
| WBsf437804 | 4989 | 5177 | ||||
| WBsf438069 | 1403 | 1433 | ||||
| WBsf438784 | 4883 | 5228 | ||||
| WBsf440065 | 2817 | 2829 | ||||
| WBsf441077 | 4889 | 5141 | ||||
| WBsf441462 | 2141 | 2423 | ||||
| WBsf442712 | 5044 | 5149 | ||||
| WBsf046952 | 4887 | 5574 | ||||
| WBsf898872 | 9078 | 9078 | ||||
| WBsf645274 | 2322 | 2340 | ||||
| WBsf645275 | 5078 | 5122 | ||||
| WBsf701591 | 5008 | 4985 | ||||
| WBsf261990 | 3024 | 3249 | ||||
| WBsf261991 | 3284 | 3394 | ||||
| WBsf261992 | 3804 | 3852 | ||||
| WBsf265400 | 6394 | 6498 | ||||
| Feature_data | Y40D12A:Polysome | 1 | 9871 | |||
| Y40D12A:TranscriptionallyActiveRegion | 1 | 9871 | ||||
| Y40D12A:ChIPSeqTF | 1 | 9871 | ||||
| Y40D12A:TRF | 1 | 9871 | ||||
| Y40D12A:Dust | 1 | 9871 | ||||
| Y40D12A:inverted | 1 | 9871 | ||||
| Homol_data (17) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | C13B9 | 9072 | ||||
| Overlap_left | F20H11 | |||||
| Clone_left_end | C13B9 | 9072 | ||||
| Y40D12A | 1 | |||||
| Clone_right_end | F20H11 | 200 | ||||
| DB_info | Database | EMBL | NDB_AC | FO080525 | ||
| NDB_ID | _AF078792 | |||||
| NDB_SV | FO080525.2 | |||||
| Secondary_accession | AC006758 | |||||
| AF078792 | ||||||
| DB_remark | The 5' clone is F20H11, 200 bp overlap; the 3' clone is C13B9, 800 bp overlap. Actual end of this clone is at base position 9201 of C13B9. | |||||
| [121025] Sequence correction: SNP 0 bases @ 9078 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Smith A | ||||
| Harmon G | ||||||
| From_laboratory | RW | |||||
| Date | 22 Jan 1998 00:00:00 | |||||
| Date_directory | ||||||
| Species | Caenorhabditis elegans | |||||
| Visible | Clone | Y40D12A | ||||
| Remark | added 600 bp to the 3' end 020402 db | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | df5aae672ef99c63a67cd8787a20213c | ||||
| Status | Finished | |||||
| Submitted | 22 Jan 1998 00:00:00 | |||||
| Map | Sequence-III | |||||
| Interpolated_map_position | III | -1.03597 | ||||
| Method | Genomic_canonical |
