WormBase Tree Display for CDS: Y41C4A.11
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| Y41C4A.11 | Evidence | Curator_confirmed | WBPerson1983 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_III | |||
| Structure | Source_exons | 1 | 72 | |||
| 140 | 187 | |||||
| 915 | 1100 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9XWU3 | ||
| UniProt | UniProtAcc | Q9XWU3 | ||||
| UniProt_GCRP | UniProtAcc | Q9XWU3 | ||||
| AlphaFold | entry | Q9XWU3 | ||||
| NCBI_protein | GI_number | GI:1083174582 | ||||
| Protein_id | CHROMOSOME_III | CAA21549 | 2 | |||
| DB_remark | contains similarity to Pfam domain PF10601 (LITAF-like zinc ribbon domain); contains similarity to Interpro domains IPR037519 (LITAF domain containing protein), IPR006629 (LPS-induced tumour necrosis factor alpha factor) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00012757 | ||||
| Corresponding_transcript | Y41C4A.11.1 | |||||
| Corresponding_protein | CE51769 | |||||
| Corresponding_PCR_product | mv_Y41C4A.11 | |||||
| Matching_cDNA | male_Nanopore_Roach_108404 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_84478 | ||||||
| EM_Nanopore_Li_357885 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_306752 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_267044 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_361125 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7055|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_292549 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | LITAF domain-containing protein | Accession_evidence | UniProt | TR:Q9XWU3 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 09 Aug 2016 12:17:28 | WBPerson1983 | ||||
| Remark | Annotated using Pfam | |||||
| [160809 pad] Split to produce Y41C4A.32, this now follows the predited structure of chrIII.12.119.tw | Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Method | curated |
