WormBase Tree Display for Sequence: ZC47
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| ZC47 | DNA | ZC47 | 26347 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (12) | ||||
| CDS_child (200) | ||||||
| Transcript | ZC47.13b | 23199 | 21975 | |||
| ZC47.13a.1 | 23199 | 21975 | ||||
| ZC47.14.1 | 19672 | 21816 | ||||
| ZC47.3.1 | 8376 | 7150 | ||||
| ZC47.3.2 | 8381 | 6669 | ||||
| ZC47.4.1 | 10289 | 9101 | ||||
| ZC47.5.1 | 6104 | 4244 | ||||
| ZC47.6.1 | 3932 | 1975 | ||||
| ZC47.7.1 | 1575 | 299 | ||||
| Pseudogene | ZC47.8 | 13667 | 12636 | |||
| ZC47.9 | 14303 | 16401 | ||||
| ZC47.10 | 18820 | 17077 | ||||
| ZC47.11 | 12036 | 10925 | ||||
| ZC47.11:wp18 | 11785 | 10925 | ||||
| ZC47.12 | 24423 | 25614 | ||||
| PCR_product (37) | ||||||
| Allele (1324) | ||||||
| Oligo_set | Aff_ZC47.10 | 17862 | 17077 | |||
| Aff_ZC47.12 | 24956 | 25614 | ||||
| Aff_ZC47.13 | 22616 | 21975 | ||||
| Aff_ZC47.14 | 21074 | 21727 | ||||
| Aff_ZC47.3A | 7867 | 7220 | ||||
| Aff_ZC47.3B | 7867 | 6728 | ||||
| Aff_ZC47.4 | 9842 | 9190 | ||||
| Aff_ZC47.5 | 4967 | 4306 | ||||
| Aff_ZC47.6 | 3413 | 2079 | ||||
| Aff_ZC47.9 | 15528 | 16401 | ||||
| Feature_object | WBsf991264 | 104 | 254 | |||
| WBsf991265 | 1426 | 1472 | ||||
| WBsf991266 | 8544 | 8694 | ||||
| WBsf991267 | 13724 | 13874 | ||||
| WBsf1014208 | 84 | 234 | ||||
| WBsf1014209 | 8504 | 8654 | ||||
| WBsf1014210 | 13724 | 13874 | ||||
| WBsf005355 | 6105 | 6104 | ||||
| WBsf020588 | 23212 | 23211 | ||||
| WBsf021266 | 8367 | 8366 | ||||
| WBsf021759 | 14288 | 14289 | ||||
| WBsf073020 | 4237 | 4237 | ||||
| WBsf073021 | 18730 | 18730 | ||||
| WBsf074150 | 3259 | 3259 | ||||
| WBsf074270 | 22714 | 22714 | ||||
| WBsf074875 | 20925 | 20925 | ||||
| WBsf078773 | 21012 | 21012 | ||||
| WBsf079507 | 21676 | 21676 | ||||
| WBsf079589 | 4238 | 4238 | ||||
| WBsf125957 | 3933 | 3932 | ||||
| WBsf125958 | 18835 | 18834 | ||||
| WBsf127433 | 14288 | 14289 | ||||
| WBsf161512 | 10279 | 10278 | ||||
| WBsf161797 | 22714 | 22714 | ||||
| WBsf162124 | 4238 | 4238 | ||||
| WBsf162485 | 4237 | 4237 | ||||
| WBsf162955 | 18730 | 18730 | ||||
| WBsf164655 | 15586 | 15586 | ||||
| WBsf164658 | 20981 | 20981 | ||||
| WBsf165728 | 4970 | 4970 | ||||
| WBsf165730 | 8036 | 8036 | ||||
| WBsf165732 | 15665 | 15665 | ||||
| WBsf165736 | 21185 | 21185 | ||||
| WBsf165739 | 22675 | 22675 | ||||
| WBsf167547 | 4806 | 4806 | ||||
| WBsf167964 | 2202 | 2202 | ||||
| WBsf167966 | 3388 | 3388 | ||||
| WBsf167974 | 17250 | 17250 | ||||
| WBsf167975 | 17636 | 17636 | ||||
| WBsf167976 | 21048 | 21048 | ||||
| WBsf170154 | 3259 | 3259 | ||||
| WBsf174389 | 4238 | 4237 | ||||
| WBsf174953 | 4237 | 4236 | ||||
| WBsf224443 | 21728 | 21787 | ||||
| WBsf224444 | 21728 | 21813 | ||||
| WBsf226200 | 2078 | 1980 | ||||
| WBsf226201 | 4305 | 4239 | ||||
| WBsf245584 | 21833 | 21834 | ||||
| WBsf248333 | 7150 | 7149 | ||||
| WBsf248334 | 9102 | 9101 | ||||
| WBsf248335 | 4293 | 4292 | ||||
| WBsf248336 | 1974 | 1973 | ||||
| WBsf248337 | 2063 | 2062 | ||||
| WBsf248338 | 21865 | 21864 | ||||
| WBsf273296 | 7151 | 7150 | ||||
| WBsf273579 | 21860 | 21861 | ||||
| WBsf615785 | 7137 | 7136 | ||||
| WBsf616017 | 22456 | 22455 | ||||
| WBsf616238 | 2078 | 2077 | ||||
| WBsf616777 | 7945 | 7944 | ||||
| WBsf616878 | 20615 | 20614 | ||||
| WBsf617139 | 2094 | 2093 | ||||
| WBsf617941 | 21812 | 21813 | ||||
| WBsf618402 | 21788 | 21789 | ||||
| WBsf619950 | 15661 | 15662 | ||||
| WBsf619951 | 15715 | 15716 | ||||
| WBsf619952 | 15773 | 15774 | ||||
| WBsf619953 | 16762 | 16763 | ||||
| WBsf619954 | 17011 | 17010 | ||||
| WBsf619955 | 25702 | 25703 | ||||
| WBsf620259 | 10850 | 10849 | ||||
| WBsf620260 | 12601 | 12600 | ||||
| WBsf620261 | 15728 | 15729 | ||||
| WBsf620262 | 15762 | 15763 | ||||
| WBsf620263 | 16758 | 16759 | ||||
| WBsf620264 | 17035 | 17034 | ||||
| WBsf620438 | 12602 | 12601 | ||||
| WBsf620527 | 12604 | 12603 | ||||
| WBsf620528 | 15714 | 15715 | ||||
| WBsf620529 | 25698 | 25699 | ||||
| WBsf620717 | 17017 | 17016 | ||||
| WBsf620945 | 15707 | 15708 | ||||
| WBsf621073 | 10853 | 10852 | ||||
| WBsf621074 | 25695 | 25696 | ||||
| WBsf956548 | 1541 | 1540 | ||||
| WBsf956559 | 7103 | 7102 | ||||
| WBsf956560 | 7103 | 7102 | ||||
| WBsf956570 | 10078 | 10077 | ||||
| WBsf956571 | 10279 | 10278 | ||||
| WBsf956572 | 11141 | 11140 | ||||
| WBsf956578 | 12051 | 12050 | ||||
| WBsf956580 | 13451 | 13450 | ||||
| WBsf956582 | 13704 | 13703 | ||||
| WBsf956583 | 13890 | 13889 | ||||
| WBsf956589 | 15783 | 15784 | ||||
| WBsf956601 | 18835 | 18834 | ||||
| WBsf956602 | 19677 | 19678 | ||||
| WBsf956603 | 19677 | 19678 | ||||
| WBsf956618 | 24410 | 24411 | ||||
| WBsf979869 | 4234 | 4233 | ||||
| WBsf980028 | 21795 | 21796 | ||||
| WBsf392767 | 6445 | 6449 | ||||
| WBsf393350 | 13973 | 14221 | ||||
| WBsf393528 | 16587 | 16735 | ||||
| WBsf393771 | 15601 | 15752 | ||||
| WBsf396117 | 23382 | 23548 | ||||
| WBsf396403 | 19349 | 19560 | ||||
| WBsf397055 | 13709 | 14268 | ||||
| WBsf397556 | 3965 | 4259 | ||||
| WBsf397578 | 6186 | 6485 | ||||
| WBsf397799 | 19386 | 19618 | ||||
| WBsf397914 | 8751 | 8785 | ||||
| WBsf398017 | 16806 | 16817 | ||||
| WBsf400545 | 19450 | 19520 | ||||
| WBsf400859 | 4035 | 4400 | ||||
| WBsf400999 | 8210 | 8211 | ||||
| WBsf401869 | 19324 | 19668 | ||||
| WBsf402100 | 1596 | 1804 | ||||
| WBsf403758 | 23434 | 24168 | ||||
| WBsf404990 | 13873 | 14174 | ||||
| WBsf405944 | 13873 | 14174 | ||||
| WBsf407660 | 19284 | 19638 | ||||
| WBsf408096 | 23445 | 23590 | ||||
| WBsf408438 | 13792 | 14384 | ||||
| WBsf408661 | 23485 | 24211 | ||||
| WBsf408708 | 6127 | 6595 | ||||
| WBsf409011 | 8553 | 9020 | ||||
| WBsf409284 | 19365 | 19663 | ||||
| WBsf409718 | 19309 | 19626 | ||||
| WBsf410768 | 18799 | 19706 | ||||
| WBsf411035 | 13906 | 14202 | ||||
| WBsf411145 | 13747 | 14315 | ||||
| WBsf411285 | 23841 | 24185 | ||||
| WBsf411343 | 8360 | 9036 | ||||
| WBsf411427 | 6235 | 6595 | ||||
| WBsf412449 | 16744 | 17022 | ||||
| WBsf412512 | 21285 | 21290 | ||||
| WBsf413598 | 4029 | 4400 | ||||
| WBsf415773 | 13783 | 14226 | ||||
| WBsf423534 | 4033 | 4395 | ||||
| WBsf424028 | 13749 | 14325 | ||||
| WBsf424474 | 6209 | 6563 | ||||
| WBsf424519 | 1598 | 1793 | ||||
| WBsf424566 | 23791 | 24194 | ||||
| WBsf424610 | 3954 | 4324 | ||||
| WBsf424649 | 8361 | 8972 | ||||
| WBsf426115 | 23375 | 23563 | ||||
| WBsf426413 | 13926 | 14155 | ||||
| WBsf426513 | 11524 | 11596 | ||||
| WBsf426532 | 13215 | 13318 | ||||
| WBsf426663 | 7654 | 7853 | ||||
| WBsf426816 | 6411 | 6606 | ||||
| WBsf427001 | 6903 | 6915 | ||||
| WBsf427030 | 24108 | 24212 | ||||
| WBsf427078 | 22315 | 22326 | ||||
| WBsf428852 | 19313 | 19579 | ||||
| WBsf430506 | 6304 | 6493 | ||||
| WBsf430653 | 13721 | 14278 | ||||
| WBsf430950 | 6258 | 6613 | ||||
| WBsf431156 | 8254 | 8929 | ||||
| WBsf431200 | 18945 | 19678 | ||||
| WBsf432140 | 13916 | 14185 | ||||
| WBsf432409 | 13741 | 14279 | ||||
| WBsf435620 | 6176 | 6691 | ||||
| WBsf435651 | 13715 | 14281 | ||||
| WBsf435791 | 18843 | 19702 | ||||
| WBsf437769 | 23555 | 23690 | ||||
| WBsf438097 | 4201 | 4273 | ||||
| WBsf438524 | 18790 | 19651 | ||||
| WBsf438657 | 23345 | 24051 | ||||
| WBsf439346 | 4033 | 4233 | ||||
| WBsf440805 | 3751 | 4343 | ||||
| WBsf440938 | 13864 | 14286 | ||||
| WBsf440978 | 8366 | 8930 | ||||
| WBsf441096 | 19219 | 19744 | ||||
| WBsf441311 | 10392 | 10619 | ||||
| WBsf441753 | 6248 | 6447 | ||||
| WBsf443786 | 4213 | 4231 | ||||
| WBsf443948 | 19457 | 19476 | ||||
| WBsf443950 | 3945 | 3975 | ||||
| WBsf644950 | 14188 | 14208 | ||||
| WBsf644951 | 19529 | 19542 | ||||
| WBsf678773 | 18974 | 18979 | ||||
| WBsf700053 | 6363 | 6323 | ||||
| WBsf700054 | 13908 | 13891 | ||||
| WBsf700082 | 19508 | 19422 | ||||
| WBsf700377 | 14003 | 13980 | ||||
| WBsf700378 | 23466 | 23459 | ||||
| WBsf700379 | 23923 | 23923 | ||||
| WBsf700380 | 25316 | 25293 | ||||
| WBsf716721 | 13916 | 14185 | ||||
| WBsf717053 | 23841 | 24051 | ||||
| WBsf261819 | 17271 | 17320 | ||||
| WBsf261820 | 22510 | 22561 | ||||
| WBsf265285 | 10565 | 10641 | ||||
| WBsf265286 | 24883 | 24961 | ||||
| Feature_data | ZC47:Polysome | 1 | 26347 | |||
| ZC47:TranscriptionallyActiveRegion | 1 | 26347 | ||||
| ZC47:ChIPSeqTF | 1 | 26347 | ||||
| ZC47:TRF | 1 | 26347 | ||||
| ZC47:Dust | 1 | 26347 | ||||
| ZC47:inverted | 1 | 26347 | ||||
| Homol_data | ZC47:RNAi | 1 | 26347 | |||
| ZC47:SAGE | 1 | 26347 | ||||
| ZC47:Mass-spec | 1 | 26347 | ||||
| ZC47:TEC_RED | 1 | 26347 | ||||
| ZC47:wublastx_brenneri | 1 | 26347 | ||||
| ZC47:wublastx_briggsae | 1 | 26347 | ||||
| ZC47:wublastx_remanei | 1 | 26347 | ||||
| ZC47:wublastx_worm | 1 | 26347 | ||||
| ZC47:RepeatMasker | 1 | 26347 | ||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | Y119D3A | 26342 | ||||
| Overlap_left | Y119D3B | |||||
| Clone_left_end | ZC47 | 1 | ||||
| Clone_right_end | ZC47 | 26347 | ||||
| Y119D3 | 109 | |||||
| DB_info | Database | EMBL | NDB_AC | FO081832 | ||
| NDB_ID | _AC199172 | |||||
| NDB_SV | FO081832.1 | |||||
| Secondary_accession | AC199172 | |||||
| Z81141 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | McMurray AA | ||||
| From_laboratory | RW | |||||
| Date_directory | 001206 | |||||
| Species | Caenorhabditis elegans | |||||
| Visible | Clone | ZC47 | ||||
| Remark | [rd 990709] in St Louis contig on III | |||||
| [dl 001208] Truncated left end by 7.2 kb to accomodate repetitive insertion in Y119D3B. The genes ZC47.1, ZC47.2 and ZC47.15 reside on Y119D3B | ||||||
| [20070222 db] This clone was originally sequenced by the Sanger Center; ownership officially transferred to GSC | ||||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 4b8aae4522a2aa017499625017477cc7 | ||||
| Status | Finished | 28 May 1996 00:00:00 | ||||
| Submitted | 21 Oct 1996 00:00:00 | |||||
| Annotated | 23 Oct 1996 00:00:00 | |||||
| Map | Sequence-III | |||||
| Interpolated_map_position | III | -22.5584 | ||||
| Assembly_tags | Finished Left | 4 | 1 | ZC47 | ||
| Clone right end | 104 | 109 | Y119D3 | |||
| 26347 | 26342 | ZC47 | ||||
| annotation | 18488 | 18485 | not sure if this is TTGG or TTTG | |||
| Finished Right | 26347 | 26342 | ZC47 | |||
| Method | Genomic_canonical |
