WormBase Tree Display for Gene: WBGene00019011

WBGene00019011 SMap: S_parent: Sequence: F57C9
  Identity: Version: 3
    Name: Sequence_name: F57C9.4
      Molecular_name: F57C9.4a
        F57C9.4a.1
        CE28474
        F57C9.4b
        CE28475
        F57C9.4c
        CE40970
        F57C9.4b.1
        F57C9.4c.1
      Other_name: CELE_F57C9.4 Accession_evidence: NDB BX284601
      Public_name: F57C9.4
    DB_info: Database: AceView gene 1F403
        WormQTL gene WBGene00019011
        WormFlux gene WBGene00019011
        NDB locus_tag CELE_F57C9.4
        Panther gene CAEEL|WormBase=WBGene00019011|UniProtKB=H2KYD4
          family PTHR47645
        NCBI gene 172100
        RefSeq protein NM_059058.6
            NM_001129017.5
            NM_001372662.1
        TREEFAM TREEFAM_ID TF342982
        TrEMBL UniProtAcc A5A8Q6
            H2KYD4
            H2KYD3
        UniProt_GCRP UniProtAcc H2KYD4
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 31 Aug 2012 11:56:39 WBPerson2970 Name_change: CGC_name: glo-2
        3 06 Dec 2012 11:30:10 WBPerson2970 Name_change: CGC_name: glo-2 moved to WBGene00019010
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (59)
    RNASeq_FPKM (74)
    GO_annotation: 00021517
    Contained_in_operon: CEOP1204
    Ortholog (30)
    Paralog: WBGene00009866 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00010859 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00011710 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012969 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019589 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019133 Caenorhabditis elegans From_analysis: Panther
      WBGene00022016 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004745 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00271744 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Expressed in gonad; hypodermis; and intestine. Is predicted to encode a protein with the following domains: Zinc finger, C2H2 type; Zinc finger C2H2 superfamily; and Zinc finger C2H2-type. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F57C9.4a
      F57C9.4b
      F57C9.4c
    Corresponding_transcript: F57C9.4a.1
      F57C9.4b.1
      F57C9.4c.1
    Other_sequence (18)
    Associated_feature: WBsf643247
      WBsf656258
      WBsf978636
      WBsf217583
      WBsf217584
    Transcription_factor: WBTranscriptionFactor000828
  Experimental_info: RNAi_result (34)
    Expr_pattern: Expr2078
      Expr1014250
      Expr1038212
      Expr1152615
      Expr1200064
      Expr2004349
      Expr2022574
    Drives_construct: WBCnstr00015674
      WBCnstr00026126
    Construct_product: WBCnstr00015674
      WBCnstr00017946
      WBCnstr00019099
      WBCnstr00021778
      WBCnstr00026126
    Antibody: WBAntibody00002361
      WBAntibody00002362
    Microarray_results (38)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045050:csr-1(hypomorph)_downregulated
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048762:FOG-3_associated
      WBPaper00048988:neuron_expressed
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00050015:ifg-1(RNAi)_downregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00054758:alg-1(gk204)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Metformin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:PVR
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:C16A11.5-C16C8.13
      WBPaper00061527:kle-2_4298-vrk-1
      WBPaper00061527:swsn-2.2_209-ets-6
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F2
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_5_4
      cgc4489_group_2
      cgc4489_hermaphrodite_enriched_transcription_factors
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025032:cluster_15
      WBPaper00025032:PAL-1_target_genes
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00037147:heatshock_upregulated
      WBPaper00037611:RNP-8-associated
      WBPaper00037695:DD_3-day
      WBPaper00037695:LD_3-day
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040823:alg-1(gk214)_downregulated
      WBPaper00040963:TA200_down
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042258:DA1877_downregulated_GravidAdult
      WBPaper00042274:tbx-2(bx59)_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(66_min)
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_E
      [cgc6390]:Cluster_F
      [cgc6390]:intrinsic
      [cgc6390]:oogenesis-enriched
    SAGE_tag (14)
    Interaction (16)
  Map_info: Map: I Position: -0.715557
    Positive: Positive_clone: F57C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene