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WormBase Tree Display for Gene: WBGene00006868

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Name Class

WBGene00006868SMapS_parentSequenceM03A1
IdentityVersion1
NameCGC_namevab-1Person_evidenceWBPerson261
Sequence_nameM03A1.1
Molecular_nameM03A1.1
M03A1.1.1
CE25060
Other_nameCELE_M03A1.1Accession_evidenceNDBBX284602
Public_namevab-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvab
Reference_alleleWBVar00142901
Allele (418)
Legacy_informatione2 : notched head variable dystrophy of ventral cephalic region especially in L1; penetrance < 70%. ES3/0 ME3. NA8 (e1063 : penetrance 35%; e2027spo : penetrance > 90%).
See also e2, e116, e118, e200, e699, e721, e1063, e2027
[C.elegansII] e2 : notched head, variable dystrophy of ventral cephalic region, especially in L1; penetrance < 70%. ES3/0 ME3. OA>10: e1063 (penetrance 35%), e2027spo (penetrance > 90%), e699 etc. [Brenner 1974; Lewis and Hodgkin 1979; CB; CZ]
Strain (24)
RNASeq_FPKM (74)
GO_annotation (38)
OrthologWBGene00065095Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034210Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00155867Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00125246Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00160030Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00154546Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00150969Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00149052Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00153659Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00145178Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00145179Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00142562Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00125977Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00179585Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00132909Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00127889Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00137154Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00053716Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00078108Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00055694Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00057412Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00056596Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00056595Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00069568Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00052702Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00178261Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00146827Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g7045Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2291Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g730Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g348Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12697Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27473Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7543Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g2978Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4659Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10177Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00215.g7198Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00875.g14695Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08193.g21354Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vab-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4511Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15081Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00541.g12614Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00541.g12615Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06765Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_06766Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_004460Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11900Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16329Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20228920Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4270Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248125Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00114883Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00285349Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0025936Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-990415-58Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-990415-60Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
ZFIN:ZDB-GENE-990415-61Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-990415-62Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-990415-63Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-990415-65Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030826-6Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-001207-7Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-050522-415Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-070713-2Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
ZFIN:ZDB-GENE-030131-3745Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-030219-187Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-100922-51Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-010724-10Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-090311-43Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3386Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3385Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3387Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3388Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3389Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3390Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3391Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3392Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:3393Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:3394Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:3395Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:3396Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:19987Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:19296Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:107381Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:95278Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:99612Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:98277Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:99654Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
MGI:108034Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:95276Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:109378Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:99611Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
MGI:104770Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
MGI:104757Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
MGI:1096338Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
MGI:3586824Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
MGI:1096337Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:2556Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1304614Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:68389Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:708543Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
RGD:620831Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:70957Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1305602Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1562679Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1306163Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1304680Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1564232Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1560587Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1307204Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1583193Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
Paralog (69)
Structured_descriptionConcise_descriptionvab-1 encodes an ephrin receptor; during development, vab-1 activity is required for neural and epithelial morphogenesis as well as for proper axon targeting and neuronal cell migration; in addition, VAB-1 functions as a major sperm protein receptor in a sperm-sensing control mechanism that regulates oocyte meiotic maturation; VAB-1::GFP reporters are expressed in neuronal cells and in oocytes and sheath cells of the proximal gonad.Paper_evidenceWBPaper00003020
WBPaper00003843
WBPaper00005670
WBPaper00027013
Curator_confirmedWBPerson1843
Date_last_updated28 Feb 2007 00:00:00
Automated_descriptionEnables ephrin receptor activity and protein domain specific binding activity. Involved in several processes, including cell development; embryonic morphogenesis; and regulation of axon guidance. Located in axon and plasma membrane. Expressed in several structures, including hypodermal cell; neuroblasts; neurons; oocyte; and somatic nervous system. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; aortic dissection; cataract 6 multiple types; and gastrointestinal system cancer (multiple). Is an ortholog of several human genes including EPHB1 (EPH receptor B1); EPHB2 (EPH receptor B2); and EPHB3 (EPH receptor B3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (14)
Molecular_infoCorresponding_CDSM03A1.1
Corresponding_CDS_historyM03A1.1b:wp274
Corresponding_transcriptM03A1.1.1
Other_sequence (11)
Associated_feature (54)
Experimental_infoRNAi_result (27)
Expr_pattern (16)
Drives_constructWBCnstr00000707
WBCnstr00006419
WBCnstr00009616
WBCnstr00018076
WBCnstr00034120
WBCnstr00042438
Construct_product (15)
AntibodyWBAntibody00000876
WBAntibody00001049
WBAntibody00001576
WBAntibody00002037
WBAntibody00002313
Microarray_results (28)
Expression_cluster (158)
Interaction (248)
Anatomy_functionWBbtf0217
WBbtf0220
WBProcessWBbiopr:00000001
WBbiopr:00000068
WBbiopr:00000120
Map_infoMapIIPosition-3.85469Error0.013028
Well_ordered
PositiveInside_rearrmDf14
mDf15
Positive_cloneM03A1Person_evidenceWBPerson105
Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point266
Multi_point48
881
882
1880
4031
4032
Pos_neg_data (12)
ReferenceWBPaper00000031
WBPaper00000214
WBPaper00000608
WBPaper00003020
WBPaper00003301
WBPaper00003665
WBPaper00003674
WBPaper00003784
WBPaper00003843
WBPaper00003865
WBPaper00003939
WBPaper00004362
WBPaper00004438
WBPaper00004493
WBPaper00004900
WBPaper00005236
WBPaper00005237
WBPaper00005259
WBPaper00005308
WBPaper00005669
WBPaper00005670
WBPaper00005719
WBPaper00005834
WBPaper00006052
WBPaper00006288
WBPaper00006320
WBPaper00006422
WBPaper00006471
WBPaper00010341
WBPaper00010591
WBPaper00010632
WBPaper00010664
WBPaper00010801
WBPaper00010872
WBPaper00011804
WBPaper00012338
WBPaper00012504
WBPaper00012526
WBPaper00012743
WBPaper00014314
WBPaper00015427
WBPaper00015440
WBPaper00015717
WBPaper00016626
WBPaper00016627
WBPaper00016634
WBPaper00016882
WBPaper00016927
WBPaper00016955
WBPaper00016983
WBPaper00017094
WBPaper00017247
WBPaper00017476
WBPaper00017504
WBPaper00017635
WBPaper00017704
WBPaper00017737
WBPaper00017738
WBPaper00018031
WBPaper00018100
WBPaper00018333
WBPaper00018347
WBPaper00018901
WBPaper00019276
WBPaper00019582
WBPaper00019597
WBPaper00022300
WBPaper00022513
WBPaper00023155
WBPaper00023204
WBPaper00023345
WBPaper00023843
WBPaper00023844
WBPaper00024047
WBPaper00024212
WBPaper00024307
WBPaper00024312
WBPaper00024524
WBPaper00025614
WBPaper00025650
WBPaper00026110
WBPaper00026358
WBPaper00026416
WBPaper00026596
WBPaper00026680
WBPaper00026932
WBPaper00027013
WBPaper00027119
WBPaper00027225
WBPaper00027238
WBPaper00027244
WBPaper00027258
WBPaper00027264
WBPaper00027618
WBPaper00027739
WBPaper00028423
WBPaper00028566
WBPaper00030319
WBPaper00031004
WBPaper00031067
WBPaper00031546
WBPaper00031667
WBPaper00031671
WBPaper00031840
WBPaper00031842
WBPaper00031867
WBPaper00031951
WBPaper00031981
WBPaper00032446
WBPaper00033520
WBPaper00034041
WBPaper00034399
WBPaper00034526
WBPaper00034738
WBPaper00034935
WBPaper00034937
WBPaper00035407
WBPaper00037014
WBPaper00038491
WBPaper00038851
WBPaper00039091
WBPaper00039177
WBPaper00039204
WBPaper00039228
WBPaper00039569
WBPaper00039805
WBPaper00040048
WBPaper00040551
WBPaper00040629
WBPaper00040827
WBPaper00041145
WBPaper00042762
WBPaper00042766
WBPaper00042879
WBPaper00044067
WBPaper00046085
WBPaper00048280
WBPaper00048281
WBPaper00048543
WBPaper00048771
WBPaper00048862
WBPaper00049274
WBPaper00050451
WBPaper00052642
WBPaper00055090
WBPaper00056135
WBPaper00056998
WBPaper00058337
WBPaper00058362
WBPaper00060014
WBPaper00063617
WBPaper00064863
WBPaper00065085
WBPaper00065184
MethodGene