WormBase Tree Display for Gene: WBGene00001072
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WBGene00001072 | SMap | S_parent | Sequence | T14B4 | ||
---|---|---|---|---|---|---|
Identity | Version | 2 | ||||
Name | CGC_name | dpy-10 | Person_evidence | WBPerson261 | ||
Sequence_name | T14B4.7 | |||||
Molecular_name | T14B4.7 | |||||
T14B4.7.1 | ||||||
CE51880 | ||||||
Other_name (2) | ||||||
Public_name | dpy-10 | |||||
DB_info | Database | AceView | gene | 2H0 | ||
WormQTL | gene | WBGene00001072 | ||||
WormFlux | gene | WBGene00001072 | ||||
NDB | locus_tag | CELE_T14B4.7 | ||||
Panther | gene | CAEEL|WormBase=WBGene00001072|UniProtKB=P35800 | ||||
family | PTHR24637 | |||||
NCBI | gene | 36805042 | ||||
RefSeq | protein | NM_001348636.5 | ||||
SwissProt | UniProtAcc | P35800 | ||||
UniProt_GCRP | UniProtAcc | P35800 | ||||
Species | Caenorhabditis elegans | |||||
History | Version_change (2) | |||||
Split_into | WBGene00302993 | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | dpy | |||||
Reference_allele | WBVar00142982 | |||||
Allele (51) | ||||||
Possibly_affected_by | WBVar02152815 | |||||
WBVar02152872 | ||||||
WBVar02157712 | ||||||
WBVar02158431 | ||||||
WBVar02158465 | ||||||
WBVar02158466 | ||||||
WBVar02158831 | ||||||
Legacy_information | e128 : small dumpy (non-roller); sometimes poor freezing. ES3 (all stages) ME1. NA > 10 (e223 sc48 (left roller dumpy) sc30ts (left roller dumpy at 25x) sc? (pka rol-7) etc.). | |||||
[C.elegansII] e128 : small dumpy (non-roller); sometimes poor survival from freezing; non-null. Suppresses some alleles of glp-1, emb-5.ES3 (all stages) ME1. OA>10: e223, sc48 (left roller dumpy), sc30ts (pka rol-7, left roller dumpy at 25C),cn64 (dominant left roller), q291, s364fdi etc.Cloned: encodes collagen 41% identical to DPY-2. e128 is splicing defect, cg36 (left roller dumpy, ochre, probable null). [Brenner 1974; Levy et al. 1993; CH] | ||||||
Strain (668) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation (12) | ||||||
Contained_in_operon | CEOP5607 | |||||
Ortholog (22) | ||||||
Paralog (161) | ||||||
Structured_description | Concise_description | A cuticle collagen protein that afffects body morphology and movement and genetically interacts with the sqt-1 collagen gene. | Paper_evidence | WBPaper00001792 | ||
Curator_confirmed | WBPerson324 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | |||||
Automated_description | Predicted to be a structural constituent of collagen and cuticulin-based cuticle. Involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; locomotion; and post-embryonic body morphogenesis. Predicted to be part of collagen trimer. Used to study skin disease. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Disease_info | Experimental_model | DOID:37 | Homo sapiens | Paper_evidence | WBPaper00061220 | |
Curator_confirmed | WBPerson324 | |||||
Date_last_updated | 02 May 2022 00:00:00 | |||||
Models_disease_asserted | WBDOannot00001178 | |||||
Molecular_info | Corresponding_CDS | T14B4.7 | ||||
Corresponding_CDS_history | T14B4.7:wp86 | |||||
T14B4.7a:wp257 | ||||||
T14B4.7a:wp264 | ||||||
T14B4.7b:wp97 | ||||||
T14B4.7b:wp257 | ||||||
T14B4.7c:wp264 | ||||||
Corresponding_transcript | T14B4.7.1 | |||||
Corresponding_transcript_history | T14B4.7b:wp264 | |||||
Other_sequence | MHC07417_1 | |||||
MH05682 | ||||||
PPC08679_1 | ||||||
Associated_feature | WBsf650168 | |||||
WBsf650169 | ||||||
WBsf665638 | ||||||
WBsf223225 | ||||||
Experimental_info | RNAi_result (35) | |||||
Expr_pattern | Expr1022469 | |||||
Expr1030680 | ||||||
Expr1156899 | ||||||
Expr2011055 | ||||||
Expr2029292 | ||||||
Drives_construct | WBCnstr00037099 | |||||
Construct_product | WBCnstr00037099 | |||||
Regulate_expr_cluster | WBPaper00035873:dpy-10_regulated | |||||
Microarray_results (26) | ||||||
Expression_cluster (274) | ||||||
Interaction (195) | ||||||
WBProcess | WBbiopr:00000124 | |||||
Map_info | Map | II | Position | 0 | ||
Well_ordered | ||||||
Positive | Inside_rearr | mnDf40 | ||||
mC6 | ||||||
Positive_clone | T14B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
ZK857 | ||||||
Mapping_data | 2_point (51) | |||||
Multi_point (202) | ||||||
Pos_neg_data (26) | ||||||
Landmark_gene | ||||||
Reference (203) | ||||||
Method | Gene |